Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC092865.1-201ENST00000544395 1023 ntBASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 AL121834.1-201ENST00000572284 509 ntBASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 MED31-202ENST00000574128 619 ntTSL 3 BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 RN7SL426P-201ENST00000579106 295 ntBASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 ZRANB2-AS2-215ENST00000596952 624 ntTSL 5 BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 AC005479.3-201ENST00000602790 431 ntBASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 LARP7P1-201ENST00000605576 316 ntBASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 OR2AS2P-201ENST00000606902 342 ntBASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 TMEM217-202ENST00000356757 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.2
CCDC39Q9UFE4 LEKR1-201ENST00000356539 2572 ntAPPRIS P1 TSL 5 BASIC7.59□□□□□ -1.2
CCDC39Q9UFE4 NDC80-201ENST00000261597 2172 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.2
CCDC39Q9UFE4 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC7.59□□□□□ -1.2
CCDC39Q9UFE4 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 CIR1-201ENST00000342016 1921 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 RNU4-39P-201ENST00000362455 127 ntBASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 RNA5SP429-201ENST00000363688 109 ntBASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 CGA-201ENST00000369582 729 ntTSL 5 BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 RNA5SP35-201ENST00000391257 129 ntBASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 EEF1GP6-201ENST00000402309 905 ntBASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 TANK-206ENST00000406287 875 ntTSL 5 BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 AC019130.1-201ENST00000413841 391 ntTSL 2 BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 MTCO3P41-201ENST00000414801 328 ntBASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 RPS17P17-201ENST00000419392 409 ntBASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 AC019178.2-201ENST00000423595 505 ntBASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 AC010148.1-201ENST00000427619 707 ntTSL 3 BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 RPS10P21-201ENST00000430654 475 ntBASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 AC092447.2-201ENST00000435487 669 ntBASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 NFIA-AS2-203ENST00000438559 1275 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 OR10R1P-201ENST00000441524 1141 ntBASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 ELOCP23-201ENST00000452014 332 ntBASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 OFD1P7Y-201ENST00000454643 1155 ntBASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 SCDP1-201ENST00000455244 1081 ntBASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 AC016822.1-201ENST00000457975 439 ntTSL 3 BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 AC093895.1-201ENST00000506480 821 ntTSL 3 BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 AC004063.1-201ENST00000508358 547 ntTSL 4 BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 AP005902.2-201ENST00000518393 307 ntBASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 C8orf44-205ENST00000521889 598 ntAPPRIS ALT2 TSL 3 BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 OR10V3P-201ENST00000525712 725 ntBASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 AC103855.4-201ENST00000533158 265 ntBASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 AC140063.1-201ENST00000541343 259 ntBASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 HNRNPCP1-201ENST00000556181 766 ntBASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 AL133241.1-201ENST00000556832 487 ntBASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 AC010761.3-201ENST00000578819 499 ntTSL 3 BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 ZNF415P1-201ENST00000582279 1166 ntBASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 AC009237.12-201ENST00000604755 742 ntBASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 AC023206.1-201ENST00000605824 298 ntBASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 TUG1_1.1-201ENST00000610654 145 ntBASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 TP53TG1_2.1-201ENST00000611226 182 ntBASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 AC012409.3-201ENST00000611343 981 ntBASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 AC004241.3-201ENST00000611728 517 ntBASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 AL512427.1-201ENST00000618593 349 ntBASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 AC132825.8-201ENST00000640783 297 ntBASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 FGD6-205ENST00000549499 3757 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 CACNB4-223ENST00000636380 1756 ntTSL 5 BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC7.58□□□□□ -1.2
CCDC39Q9UFE4 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 ERG-202ENST00000398897 4651 ntTSL 5 BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 AP002833.3-201ENST00000625075 2265 ntBASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 OR1I1-201ENST00000209540 1242 ntAPPRIS P1 BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 GSTA5-201ENST00000284562 845 ntAPPRIS P1 TSL 5 BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 AC107977.1-201ENST00000355745 939 ntBASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 ELOCP17-201ENST00000414751 326 ntBASIC7.57□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms