Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 USP47-203ENST00000399455 7396 ntAPPRIS ALT2 TSL 5 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 RNA5SP46-201ENST00000362370 120 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 DSCAM-IT1-201ENST00000440363 720 ntTSL 3 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AL022237.1-201ENST00000446663 358 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AC073610.1-201ENST00000489971 396 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 SMG1P4-204ENST00000523028 4131 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 OR11J2P-201ENST00000555298 907 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 MFSD8-239ENST00000641590 2479 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AL355377.1-201ENST00000621125 1653 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AC103591.2-201ENST00000265259 766 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AL451142.1-201ENST00000375867 775 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AC105233.1-201ENST00000498840 781 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 NPM1P27-201ENST00000502784 830 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 GAPDHP71-201ENST00000511530 1003 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC1.78□□□□□ -2.13
SYNE1Q8NF91 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC1.78□□□□□ -2.13
SYNE1Q8NF91 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC1.78□□□□□ -2.13
SYNE1Q8NF91 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC1.78□□□□□ -2.13
SYNE1Q8NF91 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC1.78□□□□□ -2.13
SYNE1Q8NF91 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.13
SYNE1Q8NF91 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.13
SYNE1Q8NF91 CYB5AP4-201ENST00000396692 399 ntBASIC1.78□□□□□ -2.13
SYNE1Q8NF91 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC1.78□□□□□ -2.13
SYNE1Q8NF91 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC1.78□□□□□ -2.13
SYNE1Q8NF91 AL512637.1-201ENST00000439523 1231 ntBASIC1.78□□□□□ -2.13
SYNE1Q8NF91 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC1.78□□□□□ -2.13
SYNE1Q8NF91 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC1.78□□□□□ -2.13
SYNE1Q8NF91 AC007956.1-201ENST00000555623 542 ntBASIC1.78□□□□□ -2.13
SYNE1Q8NF91 AC079075.1-201ENST00000559543 878 ntBASIC1.78□□□□□ -2.13
SYNE1Q8NF91 AC044860.2-201ENST00000561005 179 ntBASIC1.78□□□□□ -2.13
SYNE1Q8NF91 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.13
SYNE1Q8NF91 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC1.78□□□□□ -2.13
SYNE1Q8NF91 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC1.78□□□□□ -2.13
SYNE1Q8NF91 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC1.78□□□□□ -2.13
SYNE1Q8NF91 RMST-209ENST00000639542 3269 ntTSL 5 BASIC1.78□□□□□ -2.13
SYNE1Q8NF91 AC125238.2-201ENST00000430003 1440 ntBASIC1.77□□□□□ -2.13
SYNE1Q8NF91 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 RNA5SP478-201ENST00000364657 115 ntBASIC1.77□□□□□ -2.13
SYNE1Q8NF91 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 AL355032.1-201ENST00000472981 438 ntBASIC1.77□□□□□ -2.13
SYNE1Q8NF91 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 AC026826.1-201ENST00000493002 361 ntBASIC1.77□□□□□ -2.13
SYNE1Q8NF91 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 WBP1LP3-201ENST00000523033 208 ntBASIC1.77□□□□□ -2.13
SYNE1Q8NF91 HMGB1P42-201ENST00000532126 553 ntBASIC1.77□□□□□ -2.13
SYNE1Q8NF91 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 GMFG-212ENST00000602185 423 ntTSL 3 BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 AC010245.2-201ENST00000606908 1167 ntBASIC1.77□□□□□ -2.13
SYNE1Q8NF91 LINC01587-204ENST00000623565 873 ntTSL 2 BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 PPP1R12B-216ENST00000608999 15248 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 RNA5SP514-201ENST00000363717 111 ntBASIC1.77□□□□□ -2.13
SYNE1Q8NF91 RN7SKP124-201ENST00000364730 341 ntBASIC1.77□□□□□ -2.13
SYNE1Q8NF91 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 AL022331.1-201ENST00000429025 477 ntBASIC1.77□□□□□ -2.13
SYNE1Q8NF91 RPS26P41-201ENST00000450370 284 ntBASIC1.77□□□□□ -2.13
SYNE1Q8NF91 AC091965.3-201ENST00000506236 208 ntBASIC1.77□□□□□ -2.13
SYNE1Q8NF91 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 RNU4ATAC-201ENST00000580972 127 ntBASIC1.77□□□□□ -2.13
SYNE1Q8NF91 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 MIR4697-201ENST00000582977 78 ntBASIC1.77□□□□□ -2.13
SYNE1Q8NF91 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC1.77□□□□□ -2.13
SYNE1Q8NF91 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 ZNF33A-204ENST00000458705 6084 ntAPPRIS P3 TSL 1 (best) BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 AC078880.4-201ENST00000617627 1749 ntBASIC1.77□□□□□ -2.13
SYNE1Q8NF91 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 115.8 ms