Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 NIFKP3-201ENST00000417799 865 ntBASIC5.74□□□□□ -1.49
CXCL12P48061 AL133325.1-201ENST00000421090 382 ntBASIC5.74□□□□□ -1.49
CXCL12P48061 FABP7P2-201ENST00000429946 379 ntBASIC5.74□□□□□ -1.49
CXCL12P48061 AC245047.2-201ENST00000441060 530 ntBASIC5.74□□□□□ -1.49
CXCL12P48061 RPS23P9-201ENST00000448848 438 ntBASIC5.74□□□□□ -1.49
CXCL12P48061 RPL7L1P3-201ENST00000455249 689 ntBASIC5.74□□□□□ -1.49
CXCL12P48061 RPL35AP28-201ENST00000459730 331 ntBASIC5.74□□□□□ -1.49
CXCL12P48061 AC096736.3-201ENST00000510753 993 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CXCL12P48061 MIR2117-201ENST00000516780 80 ntBASIC5.74□□□□□ -1.49
CXCL12P48061 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.74□□□□□ -1.49
CXCL12P48061 AC009656.1-201ENST00000531966 478 ntTSL 3 BASIC5.74□□□□□ -1.49
CXCL12P48061 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.74□□□□□ -1.49
CXCL12P48061 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.74□□□□□ -1.49
CXCL12P48061 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC5.74□□□□□ -1.49
CXCL12P48061 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC5.74□□□□□ -1.49
CXCL12P48061 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.74□□□□□ -1.49
CXCL12P48061 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC5.74□□□□□ -1.49
CXCL12P48061 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC5.74□□□□□ -1.49
CXCL12P48061 ZNF91-202ENST00000397082 3572 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
CXCL12P48061 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
CXCL12P48061 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
CXCL12P48061 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC5.74□□□□□ -1.49
CXCL12P48061 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CXCL12P48061 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CXCL12P48061 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC5.73□□□□□ -1.49
CXCL12P48061 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC5.73□□□□□ -1.49
CXCL12P48061 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
CXCL12P48061 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
CXCL12P48061 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CXCL12P48061 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CXCL12P48061 AL391261.1-201ENST00000555712 1479 ntBASIC5.73□□□□□ -1.49
CXCL12P48061 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC5.73□□□□□ -1.49
CXCL12P48061 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CXCL12P48061 AL589647.1-201ENST00000402485 466 ntBASIC5.73□□□□□ -1.49
CXCL12P48061 RN7SKP151-201ENST00000410230 316 ntBASIC5.73□□□□□ -1.49
CXCL12P48061 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC5.73□□□□□ -1.49
CXCL12P48061 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC5.73□□□□□ -1.49
CXCL12P48061 RPL7P61-201ENST00000451721 751 ntBASIC5.73□□□□□ -1.49
CXCL12P48061 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.73□□□□□ -1.49
CXCL12P48061 RPS18P6-201ENST00000476880 458 ntBASIC5.73□□□□□ -1.49
CXCL12P48061 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC5.73□□□□□ -1.49
CXCL12P48061 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC5.73□□□□□ -1.49
CXCL12P48061 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC5.73□□□□□ -1.49
CXCL12P48061 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC5.73□□□□□ -1.49
CXCL12P48061 OR51A1P-201ENST00000511110 946 ntBASIC5.73□□□□□ -1.49
CXCL12P48061 CYP4F27P-201ENST00000514557 494 ntBASIC5.73□□□□□ -1.49
CXCL12P48061 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC5.73□□□□□ -1.49
CXCL12P48061 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.73□□□□□ -1.49
CXCL12P48061 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC5.73□□□□□ -1.49
CXCL12P48061 AC108449.2-201ENST00000560865 552 ntTSL 3 BASIC5.73□□□□□ -1.49
CXCL12P48061 AC126915.2-201ENST00000610957 190 ntBASIC5.73□□□□□ -1.49
CXCL12P48061 MIR6820-201ENST00000611508 62 ntBASIC5.73□□□□□ -1.49
CXCL12P48061 WBP1LP8-201ENST00000617401 327 ntBASIC5.73□□□□□ -1.49
CXCL12P48061 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CXCL12P48061 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
CXCL12P48061 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CXCL12P48061 CTAGE11P-201ENST00000451540 2353 ntBASIC5.73□□□□□ -1.49
CXCL12P48061 UGT2B27P-201ENST00000505092 1620 ntBASIC5.73□□□□□ -1.49
CXCL12P48061 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CXCL12P48061 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC5.73□□□□□ -1.49
CXCL12P48061 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
CXCL12P48061 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC5.73□□□□□ -1.49
CXCL12P48061 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.73□□□□□ -1.49
CXCL12P48061 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC5.73□□□□□ -1.49
CXCL12P48061 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
CXCL12P48061 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
CXCL12P48061 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.73□□□□□ -1.49
CXCL12P48061 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
CXCL12P48061 USP9YP3-201ENST00000434481 1766 ntBASIC5.72□□□□□ -1.49
CXCL12P48061 LINC01963-201ENST00000562038 3148 ntBASIC5.72□□□□□ -1.49
CXCL12P48061 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CXCL12P48061 CAPS2-205ENST00000409445 2135 ntTSL 2 BASIC5.72□□□□□ -1.49
CXCL12P48061 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
CXCL12P48061 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CXCL12P48061 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CXCL12P48061 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CXCL12P48061 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CXCL12P48061 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CXCL12P48061 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC5.72□□□□□ -1.49
CXCL12P48061 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CXCL12P48061 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
CXCL12P48061 MTHFD2P5-201ENST00000320415 844 ntBASIC5.72□□□□□ -1.49
CXCL12P48061 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CXCL12P48061 AL390774.1-201ENST00000411924 246 ntBASIC5.72□□□□□ -1.49
CXCL12P48061 RPS21P8-201ENST00000413365 247 ntBASIC5.72□□□□□ -1.49
CXCL12P48061 NENFP1-201ENST00000419476 466 ntBASIC5.72□□□□□ -1.49
CXCL12P48061 AC007562.1-201ENST00000421819 517 ntBASIC5.72□□□□□ -1.49
CXCL12P48061 AC079922.1-201ENST00000443291 359 ntBASIC5.72□□□□□ -1.49
CXCL12P48061 AC023274.2-201ENST00000445264 521 ntBASIC5.72□□□□□ -1.49
CXCL12P48061 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.72□□□□□ -1.49
CXCL12P48061 AL022319.1-201ENST00000458183 1167 ntBASIC5.72□□□□□ -1.49
CXCL12P48061 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC5.72□□□□□ -1.49
CXCL12P48061 AC115223.1-201ENST00000466377 870 ntBASIC5.72□□□□□ -1.49
CXCL12P48061 AC073610.1-201ENST00000489971 396 ntBASIC5.72□□□□□ -1.49
CXCL12P48061 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC5.72□□□□□ -1.49
CXCL12P48061 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC5.72□□□□□ -1.49
CXCL12P48061 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC5.72□□□□□ -1.49
CXCL12P48061 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC5.72□□□□□ -1.49
CXCL12P48061 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC5.72□□□□□ -1.49
CXCL12P48061 KCTD9P4-201ENST00000526766 1166 ntBASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms