Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC013727.1-202ENST00000455716 580 ntTSL 4 BASIC8.39□□□□□ -1.07
COL9A1P20849 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC8.39□□□□□ -1.07
COL9A1P20849 RNU7-152P-201ENST00000458982 64 ntBASIC8.39□□□□□ -1.07
COL9A1P20849 RPS18P13-201ENST00000461260 454 ntBASIC8.39□□□□□ -1.07
COL9A1P20849 AC010168.1-201ENST00000501178 657 ntTSL 3 BASIC8.39□□□□□ -1.07
COL9A1P20849 AC104986.1-201ENST00000517978 436 ntBASIC8.39□□□□□ -1.07
COL9A1P20849 AC015468.2-201ENST00000519605 550 ntTSL 3 BASIC8.39□□□□□ -1.07
COL9A1P20849 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC8.39□□□□□ -1.07
COL9A1P20849 AC013828.2-201ENST00000532487 235 ntBASIC8.39□□□□□ -1.07
COL9A1P20849 AC135388.1-201ENST00000536512 353 ntTSL 5 BASIC8.39□□□□□ -1.07
COL9A1P20849 PPIAL4D-201ENST00000544708 495 ntAPPRIS P1 BASIC8.39□□□□□ -1.07
COL9A1P20849 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC8.39□□□□□ -1.07
COL9A1P20849 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC8.39□□□□□ -1.07
COL9A1P20849 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC8.39□□□□□ -1.07
COL9A1P20849 MIR5192-201ENST00000579892 92 ntBASIC8.39□□□□□ -1.07
COL9A1P20849 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC8.39□□□□□ -1.07
COL9A1P20849 AC113194.1-201ENST00000606037 500 ntBASIC8.39□□□□□ -1.07
COL9A1P20849 AL451049.1-201ENST00000608672 497 ntBASIC8.39□□□□□ -1.07
COL9A1P20849 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC8.39□□□□□ -1.07
COL9A1P20849 AC233309.1-201ENST00000619522 751 ntBASIC8.39□□□□□ -1.07
COL9A1P20849 Z69720.2-201ENST00000624755 279 ntBASIC8.39□□□□□ -1.07
COL9A1P20849 UOX-205ENST00000640983 544 ntTSL 4 BASIC8.39□□□□□ -1.07
COL9A1P20849 PPP6R3-218ENST00000529710 3228 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
COL9A1P20849 AC116456.2-201ENST00000623018 2209 ntBASIC8.39□□□□□ -1.07
COL9A1P20849 AL359091.1-201ENST00000449048 1734 ntBASIC8.39□□□□□ -1.07
COL9A1P20849 ICK-201ENST00000350082 6116 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
COL9A1P20849 ELP3-210ENST00000521015 3158 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
COL9A1P20849 DROSHA-201ENST00000344624 5102 ntAPPRIS P4 TSL 5 BASIC8.39□□□□□ -1.07
COL9A1P20849 SEC31B-201ENST00000370345 4612 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
COL9A1P20849 CLNK-201ENST00000226951 5599 ntAPPRIS P2 TSL 1 (best) BASIC8.39□□□□□ -1.07
COL9A1P20849 HRH2-204ENST00000636584 4067 ntTSL 3 BASIC8.39□□□□□ -1.07
COL9A1P20849 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC8.39□□□□□ -1.07
COL9A1P20849 HERC3-202ENST00000402738 4974 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
COL9A1P20849 FLJ31356-202ENST00000445878 3001 ntTSL 4 BASIC8.39□□□□□ -1.07
COL9A1P20849 PTPDC1-201ENST00000288976 4398 ntAPPRIS P4 TSL 1 (best) BASIC8.39□□□□□ -1.07
COL9A1P20849 LDB2-201ENST00000304523 2548 ntAPPRIS P3 TSL 1 (best) BASIC8.39□□□□□ -1.07
COL9A1P20849 PDPR-201ENST00000288050 9255 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
COL9A1P20849 FAM222B-201ENST00000341217 4033 ntTSL 5 BASIC8.38□□□□□ -1.07
COL9A1P20849 RSC1A1-201ENST00000345034 1854 ntAPPRIS P1 BASIC8.38□□□□□ -1.07
COL9A1P20849 RBBP5-202ENST00000367164 4290 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
COL9A1P20849 MLIP-201ENST00000274897 1815 ntAPPRIS P3 TSL 2 BASIC8.38□□□□□ -1.07
COL9A1P20849 ARHGEF3-214ENST00000497267 2197 ntTSL 2 BASIC8.38□□□□□ -1.07
COL9A1P20849 WDR47-205ENST00000400794 4134 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
COL9A1P20849 SLC9A9-201ENST00000316549 3627 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
COL9A1P20849 AC025574.1-201ENST00000554784 1653 ntBASIC8.38□□□□□ -1.07
COL9A1P20849 HKR1-202ENST00000392153 2772 ntAPPRIS ALT2 TSL 1 (best) BASIC8.38□□□□□ -1.07
COL9A1P20849 TCF4-208ENST00000543082 2399 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
COL9A1P20849 Y_RNA.31-201ENST00000362574 102 ntBASIC8.38□□□□□ -1.07
COL9A1P20849 MIR146B-201ENST00000365699 73 ntBASIC8.38□□□□□ -1.07
COL9A1P20849 SPRR1A-201ENST00000368762 270 ntAPPRIS P1 BASIC8.38□□□□□ -1.07
COL9A1P20849 RPA3-203ENST00000401447 414 ntTSL 3 BASIC8.38□□□□□ -1.07
COL9A1P20849 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC8.38□□□□□ -1.07
COL9A1P20849 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC8.38□□□□□ -1.07
COL9A1P20849 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC8.38□□□□□ -1.07
COL9A1P20849 IGKV6D-21-201ENST00000436451 409 ntAPPRIS P1 BASIC8.38□□□□□ -1.07
COL9A1P20849 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC8.38□□□□□ -1.07
COL9A1P20849 RPS10P18-201ENST00000442662 495 ntBASIC8.38□□□□□ -1.07
COL9A1P20849 AC012512.1-201ENST00000446594 718 ntBASIC8.38□□□□□ -1.07
COL9A1P20849 HIGD1AP16-201ENST00000450986 258 ntBASIC8.38□□□□□ -1.07
COL9A1P20849 RPL26P28-201ENST00000451325 435 ntBASIC8.38□□□□□ -1.07
COL9A1P20849 LINC02024-202ENST00000493545 483 ntTSL 3 BASIC8.38□□□□□ -1.07
COL9A1P20849 AC138409.2-202ENST00000507274 458 ntBASIC8.38□□□□□ -1.07
COL9A1P20849 AC006390.1-201ENST00000508068 283 ntBASIC8.38□□□□□ -1.07
COL9A1P20849 EGFLAM-AS1-201ENST00000508986 331 ntTSL 3 BASIC8.38□□□□□ -1.07
COL9A1P20849 RNA5SP401-201ENST00000515920 127 ntBASIC8.38□□□□□ -1.07
COL9A1P20849 RNU4-49P-201ENST00000516080 140 ntBASIC8.38□□□□□ -1.07
COL9A1P20849 RNU6-1314P-201ENST00000517139 104 ntBASIC8.38□□□□□ -1.07
COL9A1P20849 SNORA25.17-201ENST00000517184 124 ntBASIC8.38□□□□□ -1.07
COL9A1P20849 DEFB131D-201ENST00000526803 184 ntBASIC8.38□□□□□ -1.07
COL9A1P20849 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC8.38□□□□□ -1.07
COL9A1P20849 AC004241.1-203ENST00000552502 460 ntTSL 3 BASIC8.38□□□□□ -1.07
COL9A1P20849 LINC01588-211ENST00000556434 892 ntTSL 5 BASIC8.38□□□□□ -1.07
COL9A1P20849 AL356017.1-201ENST00000556796 594 ntTSL 4 BASIC8.38□□□□□ -1.07
COL9A1P20849 AC027808.2-203ENST00000558261 638 ntTSL 5 BASIC8.38□□□□□ -1.07
COL9A1P20849 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC8.38□□□□□ -1.07
COL9A1P20849 APOC1-202ENST00000588750 689 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
COL9A1P20849 AL589765.5-201ENST00000596133 515 ntBASIC8.38□□□□□ -1.07
COL9A1P20849 AC021646.1-201ENST00000605469 484 ntBASIC8.38□□□□□ -1.07
COL9A1P20849 AL390240.1-201ENST00000612950 384 ntBASIC8.38□□□□□ -1.07
COL9A1P20849 AC234782.5-201ENST00000617723 324 ntBASIC8.38□□□□□ -1.07
COL9A1P20849 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC8.38□□□□□ -1.07
COL9A1P20849 AL732618.1-201ENST00000623251 301 ntBASIC8.38□□□□□ -1.07
COL9A1P20849 NOS2-201ENST00000313735 4176 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
COL9A1P20849 XRN2-201ENST00000377191 3437 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
COL9A1P20849 AC068044.1-201ENST00000441585 1978 ntBASIC8.38□□□□□ -1.07
COL9A1P20849 MAP1B-201ENST00000296755 12036 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
COL9A1P20849 SPATA13-204ENST00000399949 3026 ntAPPRIS ALT2 TSL 2 BASIC8.38□□□□□ -1.07
COL9A1P20849 LCLAT1-201ENST00000309052 5060 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
COL9A1P20849 AC008817.1-201ENST00000504215 1562 ntBASIC8.38□□□□□ -1.07
COL9A1P20849 AC104118.1-201ENST00000607625 1589 ntBASIC8.38□□□□□ -1.07
COL9A1P20849 AC139099.4-201ENST00000625083 3504 ntBASIC8.38□□□□□ -1.07
COL9A1P20849 EFHB-201ENST00000295824 2823 ntAPPRIS P3 TSL 1 (best) BASIC8.38□□□□□ -1.07
COL9A1P20849 ZNF711-203ENST00000373165 4124 ntAPPRIS P3 TSL 1 (best) BASIC8.38□□□□□ -1.07
COL9A1P20849 AC010680.2-201ENST00000603521 2117 ntBASIC8.38□□□□□ -1.07
COL9A1P20849 CUX1-203ENST00000360264 13762 ntAPPRIS ALT2 TSL 1 (best) BASIC8.38□□□□□ -1.07
COL9A1P20849 MAP3K19-205ENST00000392917 1765 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
COL9A1P20849 RNASE9-209ENST00000557068 2703 ntAPPRIS P3 TSL 2 BASIC8.38□□□□□ -1.07
COL9A1P20849 TNC-210ENST00000535648 7508 ntTSL 5 BASIC8.38□□□□□ -1.07
COL9A1P20849 ITIH4-201ENST00000266041 3336 ntAPPRIS P3 TSL 1 (best) BASIC8.37□□□□□ -1.07
COL9A1P20849 EEF1A1P16-201ENST00000325349 1414 ntBASIC8.37□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms