Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 DUTP5-201ENST00000406790 469 ntBASIC7□□□□□ -1.29
CCDC88AQ3V6T2 GAPDHP42-201ENST00000406848 981 ntBASIC7□□□□□ -1.29
CCDC88AQ3V6T2 AC016397.1-201ENST00000412463 242 ntBASIC7□□□□□ -1.29
CCDC88AQ3V6T2 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 AC007562.1-201ENST00000421819 517 ntBASIC7□□□□□ -1.29
CCDC88AQ3V6T2 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 AC023274.2-201ENST00000445264 521 ntBASIC7□□□□□ -1.29
CCDC88AQ3V6T2 AC015864.1-201ENST00000496512 544 ntBASIC7□□□□□ -1.29
CCDC88AQ3V6T2 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 AC027667.1-201ENST00000545814 304 ntBASIC7□□□□□ -1.29
CCDC88AQ3V6T2 HSPE1P2-201ENST00000554777 306 ntBASIC7□□□□□ -1.29
CCDC88AQ3V6T2 HNRNPCP1-201ENST00000556181 766 ntBASIC7□□□□□ -1.29
CCDC88AQ3V6T2 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 AC079075.1-201ENST00000559543 878 ntBASIC7□□□□□ -1.29
CCDC88AQ3V6T2 RPL10P14-201ENST00000565265 298 ntBASIC7□□□□□ -1.29
CCDC88AQ3V6T2 AC087283.1-201ENST00000604029 1074 ntBASIC7□□□□□ -1.29
CCDC88AQ3V6T2 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 LPA-201ENST00000316300 6414 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 SSPO-201ENST00000378016 15589 ntAPPRIS P1 TSL 5 BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 CASP8-203ENST00000323492 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 NRCAM-203ENST00000379024 5782 ntTSL 1 (best) BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 IMMTP1-201ENST00000435590 2219 ntBASIC7□□□□□ -1.29
CCDC88AQ3V6T2 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 RPS3AP41-201ENST00000462701 778 ntBASIC7□□□□□ -1.29
CCDC88AQ3V6T2 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 DCN-210ENST00000547568 823 ntTSL 3 BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC7□□□□□ -1.29
CCDC88AQ3V6T2 AC004836.1-201ENST00000623032 634 ntBASIC7□□□□□ -1.29
CCDC88AQ3V6T2 UTY-213ENST00000612274 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 BUB3-203ENST00000368865 7828 ntAPPRIS P3 TSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 AC007938.2-201ENST00000604666 2634 ntBASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 GNAS-202ENST00000306090 477 ntTSL 5 BASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 SNORA16A-201ENST00000384342 137 ntBASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 RNU6ATAC21P-201ENST00000408656 126 ntBASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 GYG1P1-201ENST00000460864 698 ntBASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 OR51K1P-201ENST00000510214 950 ntBASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 AL049779.2-201ENST00000553847 315 ntBASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 PCNX1-201ENST00000304743 12919 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC6.99□□□□□ -1.29
CCDC88AQ3V6T2 SLC35E3-202ENST00000398004 17791 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 RN7SKP104-201ENST00000362605 328 ntBASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 RNA5SP30-201ENST00000365552 115 ntBASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 AC092106.1-201ENST00000444291 373 ntBASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 AC093267.1-201ENST00000489176 961 ntBASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 AC008897.1-201ENST00000494006 347 ntBASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 AL049872.1-201ENST00000556323 322 ntBASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 AC063977.5-201ENST00000601044 974 ntBASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC6.98□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms