Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC6.04□□□□□ -1.44
COL4A4P53420 AL389915.2-201ENST00000454576 441 ntBASIC6.04□□□□□ -1.44
COL4A4P53420 RPS18P6-201ENST00000476880 458 ntBASIC6.04□□□□□ -1.44
COL4A4P53420 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC6.04□□□□□ -1.44
COL4A4P53420 OR51K1P-201ENST00000510214 950 ntBASIC6.04□□□□□ -1.44
COL4A4P53420 RPL10P14-201ENST00000565265 298 ntBASIC6.04□□□□□ -1.44
COL4A4P53420 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC6.04□□□□□ -1.44
COL4A4P53420 MIR4480-201ENST00000582492 71 ntBASIC6.04□□□□□ -1.44
COL4A4P53420 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC6.04□□□□□ -1.44
COL4A4P53420 AC104785.1-201ENST00000603220 588 ntBASIC6.04□□□□□ -1.44
COL4A4P53420 AL022394.1-201ENST00000606979 292 ntBASIC6.04□□□□□ -1.44
COL4A4P53420 AC025574.2-201ENST00000615621 514 ntBASIC6.04□□□□□ -1.44
COL4A4P53420 AP002799.1-201ENST00000623552 423 ntBASIC6.04□□□□□ -1.44
COL4A4P53420 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
COL4A4P53420 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC6.04□□□□□ -1.44
COL4A4P53420 SIPA1L1-201ENST00000358550 6539 ntAPPRIS ALT1 TSL 2 BASIC6.04□□□□□ -1.44
COL4A4P53420 SZT2-210ENST00000634258 11045 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
COL4A4P53420 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC6.03□□□□□ -1.44
COL4A4P53420 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COL4A4P53420 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC6.03□□□□□ -1.44
COL4A4P53420 GGCX-201ENST00000233838 7569 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL4A4P53420 AC092724.1-201ENST00000624623 3397 ntBASIC6.03□□□□□ -1.44
COL4A4P53420 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COL4A4P53420 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC6.03□□□□□ -1.44
COL4A4P53420 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL4A4P53420 ITPR1-203ENST00000357086 9762 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL4A4P53420 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC6.03□□□□□ -1.44
COL4A4P53420 TRPM3-208ENST00000377105 5957 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
COL4A4P53420 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL4A4P53420 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COL4A4P53420 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL4A4P53420 CSDE1-218ENST00000610726 4312 ntTSL 5 BASIC6.03□□□□□ -1.44
COL4A4P53420 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL4A4P53420 MIR765-201ENST00000390226 114 ntBASIC6.03□□□□□ -1.44
COL4A4P53420 NENFP1-201ENST00000419476 466 ntBASIC6.03□□□□□ -1.44
COL4A4P53420 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
COL4A4P53420 AL772161.1-201ENST00000439130 476 ntBASIC6.03□□□□□ -1.44
COL4A4P53420 RSU1P1-201ENST00000453416 441 ntBASIC6.03□□□□□ -1.44
COL4A4P53420 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC6.03□□□□□ -1.44
COL4A4P53420 RN7SL51P-201ENST00000468230 285 ntBASIC6.03□□□□□ -1.44
COL4A4P53420 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC6.03□□□□□ -1.44
COL4A4P53420 NPM1P42-201ENST00000560329 862 ntBASIC6.03□□□□□ -1.44
COL4A4P53420 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC6.03□□□□□ -1.44
COL4A4P53420 TEX41-254ENST00000626394 423 ntTSL 5 BASIC6.03□□□□□ -1.44
COL4A4P53420 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC6.03□□□□□ -1.44
COL4A4P53420 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC6.03□□□□□ -1.44
COL4A4P53420 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL4A4P53420 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
COL4A4P53420 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COL4A4P53420 SPATA31C1-201ENST00000420021 3895 ntBASIC6.03□□□□□ -1.44
COL4A4P53420 LINC01197-205ENST00000614853 1774 ntTSL 3 BASIC6.03□□□□□ -1.44
COL4A4P53420 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL4A4P53420 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC6.02□□□□□ -1.44
COL4A4P53420 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC6.02□□□□□ -1.44
COL4A4P53420 KIAA1958-203ENST00000536272 7650 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
COL4A4P53420 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
COL4A4P53420 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC6.02□□□□□ -1.45
COL4A4P53420 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
COL4A4P53420 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
COL4A4P53420 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC6.02□□□□□ -1.45
COL4A4P53420 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC6.02□□□□□ -1.45
COL4A4P53420 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL4A4P53420 RNA5SP91-201ENST00000390902 119 ntBASIC6.02□□□□□ -1.45
COL4A4P53420 DNAJA1P3-201ENST00000399417 1194 ntBASIC6.02□□□□□ -1.45
COL4A4P53420 RNU6ATAC7P-201ENST00000408111 127 ntBASIC6.02□□□□□ -1.45
COL4A4P53420 U3.36-201ENST00000408418 213 ntBASIC6.02□□□□□ -1.45
COL4A4P53420 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC6.02□□□□□ -1.45
COL4A4P53420 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC6.02□□□□□ -1.45
COL4A4P53420 DSTNP5-201ENST00000427921 523 ntBASIC6.02□□□□□ -1.45
COL4A4P53420 RPS3AP38-201ENST00000435889 763 ntBASIC6.02□□□□□ -1.45
COL4A4P53420 RPL12P39-201ENST00000455456 496 ntBASIC6.02□□□□□ -1.45
COL4A4P53420 AC092905.1-201ENST00000467527 949 ntBASIC6.02□□□□□ -1.45
COL4A4P53420 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC6.02□□□□□ -1.45
COL4A4P53420 RN7SL459P-201ENST00000481078 302 ntBASIC6.02□□□□□ -1.45
COL4A4P53420 AP004607.2-201ENST00000533949 322 ntBASIC6.02□□□□□ -1.45
COL4A4P53420 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC6.02□□□□□ -1.45
COL4A4P53420 SAMMSON-209ENST00000641222 1100 ntBASIC6.02□□□□□ -1.45
COL4A4P53420 APOB-201ENST00000233242 14121 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL4A4P53420 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
COL4A4P53420 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
COL4A4P53420 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL4A4P53420 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
COL4A4P53420 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL4A4P53420 PKIB-211ENST00000615438 1936 ntTSL 5 BASIC6.02□□□□□ -1.45
COL4A4P53420 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC6.02□□□□□ -1.45
COL4A4P53420 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC6.02□□□□□ -1.45
COL4A4P53420 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL4A4P53420 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL4A4P53420 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC6.02□□□□□ -1.45
COL4A4P53420 AL355834.1-201ENST00000556602 3965 ntBASIC6.02□□□□□ -1.45
COL4A4P53420 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC6.02□□□□□ -1.45
COL4A4P53420 KCNMA1-266ENST00000639601 11920 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
COL4A4P53420 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC6.02□□□□□ -1.45
COL4A4P53420 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
COL4A4P53420 MFSD8-219ENST00000641228 2559 ntBASIC6.02□□□□□ -1.45
COL4A4P53420 CASR-205ENST00000639785 10047 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL4A4P53420 GCNT1-202ENST00000442371 5972 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL4A4P53420 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL4A4P53420 CHCHD7-203ENST00000396723 1550 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL4A4P53420 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms