Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AL356017.1-201ENST00000556796 594 ntTSL 4 BASIC5.75□□□□□ -1.49
SHOX2O60902 HMGN1P26-201ENST00000558737 303 ntBASIC5.75□□□□□ -1.49
SHOX2O60902 AC023389.2-201ENST00000580031 955 ntBASIC5.75□□□□□ -1.49
SHOX2O60902 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC5.75□□□□□ -1.49
SHOX2O60902 CLK4-214ENST00000611575 1206 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SHOX2O60902 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC5.75□□□□□ -1.49
SHOX2O60902 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC5.75□□□□□ -1.49
SHOX2O60902 AP001962.1-201ENST00000624114 559 ntBASIC5.75□□□□□ -1.49
SHOX2O60902 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC5.75□□□□□ -1.49
SHOX2O60902 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
SHOX2O60902 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SHOX2O60902 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.75□□□□□ -1.49
SHOX2O60902 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SHOX2O60902 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
SHOX2O60902 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC5.74□□□□□ -1.49
SHOX2O60902 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SHOX2O60902 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SHOX2O60902 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.74□□□□□ -1.49
SHOX2O60902 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
SHOX2O60902 OR5B21-201ENST00000360374 931 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
SHOX2O60902 RN7SKP97-201ENST00000410966 333 ntBASIC5.74□□□□□ -1.49
SHOX2O60902 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC5.74□□□□□ -1.49
SHOX2O60902 NANOGP4-201ENST00000427230 913 ntBASIC5.74□□□□□ -1.49
SHOX2O60902 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5.74□□□□□ -1.49
SHOX2O60902 MEMO1P4-201ENST00000453590 386 ntBASIC5.74□□□□□ -1.49
SHOX2O60902 AL354872.1-201ENST00000456361 967 ntBASIC5.74□□□□□ -1.49
SHOX2O60902 RNU1-88P-201ENST00000459274 128 ntBASIC5.74□□□□□ -1.49
SHOX2O60902 AC021106.1-201ENST00000509020 1058 ntBASIC5.74□□□□□ -1.49
SHOX2O60902 AC091912.1-201ENST00000511351 248 ntBASIC5.74□□□□□ -1.49
SHOX2O60902 EIF3KP3-201ENST00000514461 639 ntBASIC5.74□□□□□ -1.49
SHOX2O60902 AC008708.1-201ENST00000517346 474 ntTSL 3 BASIC5.74□□□□□ -1.49
SHOX2O60902 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC5.74□□□□□ -1.49
SHOX2O60902 AC245519.1-201ENST00000522799 512 ntTSL 4 BASIC5.74□□□□□ -1.49
SHOX2O60902 AC007991.4-201ENST00000522970 605 ntTSL 3 BASIC5.74□□□□□ -1.49
SHOX2O60902 AC130365.2-201ENST00000525882 1201 ntBASIC5.74□□□□□ -1.49
SHOX2O60902 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC5.74□□□□□ -1.49
SHOX2O60902 AC025419.1-203ENST00000540652 726 ntTSL 3 BASIC5.74□□□□□ -1.49
SHOX2O60902 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SHOX2O60902 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC5.74□□□□□ -1.49
SHOX2O60902 AC005632.2-201ENST00000564271 828 ntBASIC5.74□□□□□ -1.49
SHOX2O60902 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC5.74□□□□□ -1.49
SHOX2O60902 AC091769.2-201ENST00000605385 479 ntTSL 4 BASIC5.74□□□□□ -1.49
SHOX2O60902 SSX9-202ENST00000608568 580 ntTSL 4 BASIC5.74□□□□□ -1.49
SHOX2O60902 AL365181.4-201ENST00000609800 547 ntBASIC5.74□□□□□ -1.49
SHOX2O60902 AL589743.6-201ENST00000611025 117 ntBASIC5.74□□□□□ -1.49
SHOX2O60902 AL589182.1-201ENST00000611785 320 ntTSL 5 BASIC5.74□□□□□ -1.49
SHOX2O60902 AC022021.1-201ENST00000634334 843 ntTSL 5 BASIC5.74□□□□□ -1.49
SHOX2O60902 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SHOX2O60902 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC5.74□□□□□ -1.49
SHOX2O60902 AL022393.1-201ENST00000625142 1677 ntBASIC5.74□□□□□ -1.49
SHOX2O60902 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SHOX2O60902 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SHOX2O60902 AC104623.2-202ENST00000623477 4002 ntBASIC5.74□□□□□ -1.49
SHOX2O60902 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.74□□□□□ -1.49
SHOX2O60902 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
SHOX2O60902 AL731566.1-201ENST00000620490 1937 ntBASIC5.74□□□□□ -1.49
SHOX2O60902 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
SHOX2O60902 AL356479.1-203ENST00000411798 1440 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SHOX2O60902 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.74□□□□□ -1.49
SHOX2O60902 AC022417.1-201ENST00000624768 1303 ntBASIC5.74□□□□□ -1.49
SHOX2O60902 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SHOX2O60902 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.73□□□□□ -1.49
SHOX2O60902 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.73□□□□□ -1.49
SHOX2O60902 AC100778.3-201ENST00000580060 1750 ntBASIC5.73□□□□□ -1.49
SHOX2O60902 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SHOX2O60902 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.73□□□□□ -1.49
SHOX2O60902 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SHOX2O60902 OR14A16-202ENST00000641093 1367 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
SHOX2O60902 AP004607.3-201ENST00000530354 3915 ntBASIC5.73□□□□□ -1.49
SHOX2O60902 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
SHOX2O60902 AC010894.1-201ENST00000313760 361 ntBASIC5.73□□□□□ -1.49
SHOX2O60902 RN7SKP187-201ENST00000365536 330 ntBASIC5.73□□□□□ -1.49
SHOX2O60902 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
SHOX2O60902 AC026310.1-201ENST00000396004 378 ntBASIC5.73□□□□□ -1.49
SHOX2O60902 AC003045.1-201ENST00000398779 713 ntBASIC5.73□□□□□ -1.49
SHOX2O60902 RPL21P67-201ENST00000402896 478 ntBASIC5.73□□□□□ -1.49
SHOX2O60902 AC105275.1-201ENST00000417794 491 ntTSL 3 BASIC5.73□□□□□ -1.49
SHOX2O60902 RNF10P1-201ENST00000418589 369 ntBASIC5.73□□□□□ -1.49
SHOX2O60902 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC5.73□□□□□ -1.49
SHOX2O60902 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC5.73□□□□□ -1.49
SHOX2O60902 OR3D1P-201ENST00000438288 955 ntBASIC5.73□□□□□ -1.49
SHOX2O60902 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC5.73□□□□□ -1.49
SHOX2O60902 COX4I1P2-201ENST00000447446 547 ntBASIC5.73□□□□□ -1.49
SHOX2O60902 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SHOX2O60902 RN7SL413P-201ENST00000482700 297 ntBASIC5.73□□□□□ -1.49
SHOX2O60902 LINC02237-201ENST00000521753 805 ntTSL 3 BASIC5.73□□□□□ -1.49
SHOX2O60902 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC5.73□□□□□ -1.49
SHOX2O60902 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC5.73□□□□□ -1.49
SHOX2O60902 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC5.73□□□□□ -1.49
SHOX2O60902 DPPA3P2-202ENST00000557188 1219 ntBASIC5.73□□□□□ -1.49
SHOX2O60902 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SHOX2O60902 AC138207.8-204ENST00000579588 527 ntBASIC5.73□□□□□ -1.49
SHOX2O60902 AP005262.1-201ENST00000582646 997 ntBASIC5.73□□□□□ -1.49
SHOX2O60902 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC5.73□□□□□ -1.49
SHOX2O60902 AC073869.10-201ENST00000642016 354 ntBASIC5.73□□□□□ -1.49
SHOX2O60902 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SHOX2O60902 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
SHOX2O60902 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SHOX2O60902 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
SHOX2O60902 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 90.8 ms