Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 CDC40-203ENST00000368932 3933 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 NCALD-201ENST00000220931 3283 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 ZNF585B-204ENST00000531805 2971 ntTSL 2 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 ZNF544-206ENST00000596652 2818 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 ZNF544-217ENST00000600220 2837 ntAPPRIS ALT2 TSL 3 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 RND3-202ENST00000375734 2777 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 MAPK10-377ENST00000642006 2752 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 KIFAP3-203ENST00000367767 2718 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 DCX-205ENST00000488120 2476 ntAPPRIS ALT1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 HIPK1-201ENST00000340480 6997 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 HEPACAM2-202ENST00000394468 2148 ntAPPRIS ALT2 TSL 2 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 ZNF69-202ENST00000429654 2010 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AMBN-203ENST00000613447 1997 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AL021396.1-202ENST00000457707 1929 ntTSL 2 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 BCL2L14-204ENST00000396367 1886 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 DBF4P1-201ENST00000412976 1892 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 UGT2B27P-201ENST00000505092 1620 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 MTCO1P14-201ENST00000441695 1559 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 CASC23-201ENST00000534076 1563 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 ATP2B4-201ENST00000341360 4658 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AL121949.2-201ENST00000403446 1548 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 INPP4B-212ENST00000507861 1506 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 TMEM116-201ENST00000355445 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AC093844.1-201ENST00000514910 1361 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 ZBTB18-201ENST00000358704 3851 ntAPPRIS P2 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 CCL13-201ENST00000225844 851 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 CLDN10-201ENST00000299339 949 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 RNU6-1122P-201ENST00000384449 107 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 OR6C69P-201ENST00000394268 893 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 CREM-214ENST00000395887 849 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 NUS1P4-201ENST00000401550 585 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 MTCO3P31-201ENST00000405526 789 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 MIR548F1-201ENST00000408667 84 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 MTND1P21-201ENST00000412991 285 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AC048351.1-201ENST00000420064 602 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 EIF1P1-201ENST00000421436 341 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 TBX18-AS1-201ENST00000423086 421 ntTSL 3 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 E2F6P1-201ENST00000428850 745 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 E2F6P3-201ENST00000441743 743 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 RAB11AP1-201ENST00000442978 646 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AC093157.1-202ENST00000446527 1045 ntTSL 3 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 RBMY3AP-201ENST00000449381 1145 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 RPS29P5-201ENST00000452777 171 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 RPL7AP52-201ENST00000458096 790 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 VN1R6P-201ENST00000458417 907 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 CREM-234ENST00000484283 660 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 CREM-236ENST00000487763 429 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AC138853.1-201ENST00000503549 823 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AC012613.1-202ENST00000512647 424 ntTSL 3 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 FBXO16-207ENST00000518734 995 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 SNX18P27-201ENST00000523611 779 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 ZNF726-203ENST00000525354 806 ntTSL 2 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AP000907.3-201ENST00000530733 322 ntTSL 3 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 PTPRJ-AS1-201ENST00000533964 301 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 SLC25A51P2-201ENST00000535708 889 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AP002373.2-201ENST00000541631 1060 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 DPPA3P2-201ENST00000553589 478 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AC004817.1-201ENST00000553621 721 ntTSL 4 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 LINC02322-201ENST00000554773 338 ntTSL 2 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 TIMM9-205ENST00000555404 430 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AL121820.1-201ENST00000556919 461 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 RD3L-201ENST00000557640 1201 ntAPPRIS P1 TSL 3 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 ULK4P2-202ENST00000564187 492 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AC068724.2-201ENST00000565685 532 ntTSL 4 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AC015853.3-201ENST00000570974 478 ntTSL 4 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AC064805.1-203ENST00000577560 526 ntTSL 3 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 SEPT7P9-203ENST00000604116 343 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AC004852.1-201ENST00000605206 154 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AL589743.7-201ENST00000612637 233 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AC120349.2-201ENST00000625002 298 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 PTP4A1-206ENST00000627002 447 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 MAP4K4-203ENST00000347699 3792 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 ESRP1-201ENST00000358397 3756 ntAPPRIS ALT1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 TYW1B-203ENST00000620995 3113 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 PRKCQ-204ENST00000610727 3077 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 ADGRL3-214ENST00000511324 5042 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 HYDIN2-203ENST00000614586 13885 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AC006305.1-201ENST00000382897 2558 ntTSL 2 BASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms