Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
COL6A3P12111 SH3GLB1-201ENST00000370558 6371 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A3P12111 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC5.66□□□□□ -1.5
COL6A3P12111 PPP2R5C-205ENST00000445439 1526 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A3P12111 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC5.66□□□□□ -1.5
COL6A3P12111 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A3P12111 WDCP-202ENST00000406895 3700 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A3P12111 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC5.66□□□□□ -1.5
COL6A3P12111 ARHGAP42P4-201ENST00000549782 2934 ntBASIC5.66□□□□□ -1.5
COL6A3P12111 USP24-201ENST00000294383 10549 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
COL6A3P12111 FCRL5-201ENST00000361835 5390 ntAPPRIS P2 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A3P12111 NXF4-202ENST00000416098 1465 ntBASIC5.65□□□□□ -1.5
COL6A3P12111 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC5.65□□□□□ -1.5
COL6A3P12111 OR8J1-201ENST00000303039 1074 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
COL6A3P12111 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC5.65□□□□□ -1.5
COL6A3P12111 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
COL6A3P12111 AC233289.1-201ENST00000403700 508 ntBASIC5.65□□□□□ -1.5
COL6A3P12111 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC5.65□□□□□ -1.5
COL6A3P12111 GAS5-208ENST00000425771 242 ntTSL 3 BASIC5.65□□□□□ -1.5
COL6A3P12111 RN7SL870P-201ENST00000460111 296 ntBASIC5.65□□□□□ -1.5
COL6A3P12111 AL603882.1-201ENST00000463059 681 ntBASIC5.65□□□□□ -1.5
COL6A3P12111 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC5.65□□□□□ -1.5
COL6A3P12111 AC099676.1-201ENST00000608886 657 ntBASIC5.65□□□□□ -1.5
COL6A3P12111 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC5.65□□□□□ -1.5
COL6A3P12111 ZKSCAN1-206ENST00000620510 9192 ntTSL 5 BASIC5.65□□□□□ -1.5
COL6A3P12111 NWD1-205ENST00000549814 6614 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
COL6A3P12111 ELP4-218ENST00000639570 5795 ntTSL 5 BASIC5.65□□□□□ -1.5
COL6A3P12111 MAPK8-201ENST00000360332 5438 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL6A3P12111 CHCHD7-203ENST00000396723 1550 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL6A3P12111 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL6A3P12111 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL6A3P12111 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC5.65□□□□□ -1.5
COL6A3P12111 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
COL6A3P12111 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL6A3P12111 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL6A3P12111 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL6A3P12111 AC018765.1-201ENST00000623357 3446 ntBASIC5.65□□□□□ -1.5
COL6A3P12111 FHL2-207ENST00000409177 4881 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL6A3P12111 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
COL6A3P12111 AL592293.2-201ENST00000422292 996 ntBASIC5.65□□□□□ -1.5
COL6A3P12111 RPL7L1P11-201ENST00000446092 721 ntBASIC5.65□□□□□ -1.5
COL6A3P12111 VN1R34P-201ENST00000447387 883 ntBASIC5.65□□□□□ -1.5
COL6A3P12111 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.65□□□□□ -1.5
COL6A3P12111 RNU1-45P-201ENST00000517191 141 ntBASIC5.65□□□□□ -1.5
COL6A3P12111 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC5.65□□□□□ -1.5
COL6A3P12111 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC5.65□□□□□ -1.5
COL6A3P12111 AC091953.5-201ENST00000622919 233 ntBASIC5.65□□□□□ -1.5
COL6A3P12111 AC130456.6-201ENST00000623745 765 ntBASIC5.65□□□□□ -1.5
COL6A3P12111 AC004777.1-201ENST00000624317 287 ntBASIC5.65□□□□□ -1.5
COL6A3P12111 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC5.65□□□□□ -1.5
COL6A3P12111 PRDM15-203ENST00000422911 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL6A3P12111 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL6A3P12111 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL6A3P12111 SYNPO2-202ENST00000429713 9920 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
COL6A3P12111 MYPN-201ENST00000354393 4596 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
COL6A3P12111 DMTF1-213ENST00000432937 2411 ntTSL 2 BASIC5.65□□□□□ -1.51
COL6A3P12111 TOGARAM1-201ENST00000361462 6375 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL6A3P12111 SGMS2-202ENST00000394684 6149 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL6A3P12111 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL6A3P12111 OR4K15-201ENST00000305051 1216 ntBASIC5.65□□□□□ -1.51
COL6A3P12111 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
COL6A3P12111 RN7SL542P-201ENST00000467147 294 ntBASIC5.65□□□□□ -1.51
COL6A3P12111 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC5.65□□□□□ -1.51
COL6A3P12111 NPM1P27-201ENST00000502784 830 ntBASIC5.65□□□□□ -1.51
COL6A3P12111 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC5.65□□□□□ -1.51
COL6A3P12111 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC5.65□□□□□ -1.51
COL6A3P12111 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC5.65□□□□□ -1.51
COL6A3P12111 BX322650.1-201ENST00000332359 2143 ntBASIC5.65□□□□□ -1.51
COL6A3P12111 PDPR-210ENST00000568530 7223 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL6A3P12111 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC5.65□□□□□ -1.51
COL6A3P12111 BSN-201ENST00000296452 15955 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL6A3P12111 MITF-206ENST00000394351 1956 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL6A3P12111 ZNF699-201ENST00000308650 2094 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL6A3P12111 INSR-202ENST00000341500 8954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL6A3P12111 CLCA3P-203ENST00000490028 2781 ntBASIC5.64□□□□□ -1.51
COL6A3P12111 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL6A3P12111 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC5.64□□□□□ -1.51
COL6A3P12111 TMEM183AP1-205ENST00000432739 290 ntBASIC5.64□□□□□ -1.51
COL6A3P12111 AL359644.1-204ENST00000440807 440 ntTSL 3 BASIC5.64□□□□□ -1.51
COL6A3P12111 AC006499.6-201ENST00000511169 607 ntBASIC5.64□□□□□ -1.51
COL6A3P12111 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC5.64□□□□□ -1.51
COL6A3P12111 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL6A3P12111 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL6A3P12111 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL6A3P12111 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL6A3P12111 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC5.64□□□□□ -1.51
COL6A3P12111 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL6A3P12111 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC5.64□□□□□ -1.51
COL6A3P12111 ALB-214ENST00000509063 1911 ntTSL 5 BASIC5.64□□□□□ -1.51
COL6A3P12111 ZMYM3-205ENST00000373984 5253 ntTSL 5 BASIC5.64□□□□□ -1.51
COL6A3P12111 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL6A3P12111 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
COL6A3P12111 MTAP-201ENST00000380172 6122 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL6A3P12111 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL6A3P12111 DAPK2-213ENST00000612884 8086 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL6A3P12111 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.64□□□□□ -1.51
COL6A3P12111 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
COL6A3P12111 ATP1A2-201ENST00000361216 5421 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL6A3P12111 SNORA70F-201ENST00000384142 135 ntBASIC5.64□□□□□ -1.51
COL6A3P12111 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 198.6 ms