Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC239584.1-201ENST00000510419 732 ntTSL 5 BASIC5.2□□□□□ -1.58
NKX3-1Q99801 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC5.2□□□□□ -1.58
NKX3-1Q99801 AC021269.1-201ENST00000526860 705 ntBASIC5.2□□□□□ -1.58
NKX3-1Q99801 AP003168.1-201ENST00000530091 307 ntBASIC5.2□□□□□ -1.58
NKX3-1Q99801 NPIPB14P-203ENST00000532298 987 ntBASIC5.2□□□□□ -1.58
NKX3-1Q99801 AC024405.1-201ENST00000532521 1042 ntBASIC5.2□□□□□ -1.58
NKX3-1Q99801 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC5.2□□□□□ -1.58
NKX3-1Q99801 AC010547.7-201ENST00000570323 333 ntBASIC5.2□□□□□ -1.58
NKX3-1Q99801 AC139099.1-201ENST00000573737 976 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
NKX3-1Q99801 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC5.2□□□□□ -1.58
NKX3-1Q99801 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC5.2□□□□□ -1.58
NKX3-1Q99801 AP000654.1-201ENST00000602510 1192 ntTSL 5 BASIC5.2□□□□□ -1.58
NKX3-1Q99801 AL360012.1-201ENST00000602813 131 ntBASIC5.2□□□□□ -1.58
NKX3-1Q99801 KATNBL1P1-201ENST00000605192 748 ntBASIC5.2□□□□□ -1.58
NKX3-1Q99801 AC010325.3-201ENST00000641084 394 ntBASIC5.2□□□□□ -1.58
NKX3-1Q99801 AC016583.1-201ENST00000624221 2431 ntBASIC5.2□□□□□ -1.58
NKX3-1Q99801 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
NKX3-1Q99801 AC004076.2-201ENST00000620532 3323 ntBASIC5.2□□□□□ -1.58
NKX3-1Q99801 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
NKX3-1Q99801 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
NKX3-1Q99801 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.2□□□□□ -1.58
NKX3-1Q99801 AC011416.1-201ENST00000514947 1732 ntBASIC5.2□□□□□ -1.58
NKX3-1Q99801 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
NKX3-1Q99801 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
NKX3-1Q99801 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
NKX3-1Q99801 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
NKX3-1Q99801 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
NKX3-1Q99801 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
NKX3-1Q99801 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
NKX3-1Q99801 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
NKX3-1Q99801 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
NKX3-1Q99801 AC024651.2-201ENST00000562480 2098 ntBASIC5.19□□□□□ -1.58
NKX3-1Q99801 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
NKX3-1Q99801 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
NKX3-1Q99801 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
NKX3-1Q99801 RNA5SP279-201ENST00000365513 117 ntBASIC5.19□□□□□ -1.58
NKX3-1Q99801 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 NPM1P37-201ENST00000403105 874 ntBASIC5.19□□□□□ -1.58
NKX3-1Q99801 MIR1275-201ENST00000408770 80 ntBASIC5.19□□□□□ -1.58
NKX3-1Q99801 RN7SKP86-201ENST00000410454 332 ntBASIC5.19□□□□□ -1.58
NKX3-1Q99801 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
NKX3-1Q99801 MAPRE1P3-201ENST00000435438 796 ntBASIC5.19□□□□□ -1.58
NKX3-1Q99801 OR2L9P-201ENST00000444456 913 ntBASIC5.19□□□□□ -1.58
NKX3-1Q99801 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 KRTAP2-5P-201ENST00000446109 396 ntBASIC5.19□□□□□ -1.58
NKX3-1Q99801 ZNF619P1-201ENST00000446539 752 ntBASIC5.19□□□□□ -1.58
NKX3-1Q99801 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 AL500527.1-201ENST00000448532 255 ntBASIC5.19□□□□□ -1.58
NKX3-1Q99801 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 AC093827.1-201ENST00000480094 861 ntBASIC5.19□□□□□ -1.58
NKX3-1Q99801 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 CCDC11P1-201ENST00000503137 1162 ntBASIC5.19□□□□□ -1.58
NKX3-1Q99801 LINC02114-201ENST00000503757 801 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
NKX3-1Q99801 ST13P12-201ENST00000508958 1094 ntBASIC5.19□□□□□ -1.58
NKX3-1Q99801 Vault.2-201ENST00000516519 98 ntBASIC5.19□□□□□ -1.58
NKX3-1Q99801 AC011853.1-201ENST00000518911 454 ntBASIC5.19□□□□□ -1.58
NKX3-1Q99801 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 AC005520.3-201ENST00000602874 370 ntBASIC5.19□□□□□ -1.58
NKX3-1Q99801 AC022387.2-201ENST00000604050 448 ntBASIC5.19□□□□□ -1.58
NKX3-1Q99801 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 OR7M1P-201ENST00000608946 533 ntBASIC5.19□□□□□ -1.58
NKX3-1Q99801 RFPL4AP6-201ENST00000616792 846 ntBASIC5.19□□□□□ -1.58
NKX3-1Q99801 SNX18P12-201ENST00000624821 759 ntBASIC5.19□□□□□ -1.58
NKX3-1Q99801 OXSM-209ENST00000626005 309 ntTSL 3 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 CAP1P2-201ENST00000417455 1409 ntBASIC5.19□□□□□ -1.58
NKX3-1Q99801 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.19□□□□□ -1.58
NKX3-1Q99801 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
NKX3-1Q99801 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
NKX3-1Q99801 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
NKX3-1Q99801 AC027279.4-201ENST00000624371 2072 ntBASIC5.19□□□□□ -1.58
NKX3-1Q99801 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC5.19□□□□□ -1.58
NKX3-1Q99801 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
NKX3-1Q99801 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.19□□□□□ -1.58
NKX3-1Q99801 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
NKX3-1Q99801 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
NKX3-1Q99801 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
NKX3-1Q99801 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms