Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 AC078880.4-201ENST00000617627 1749 ntBASIC5.9□□□□□ -1.47
CLRN1P58418 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
CLRN1P58418 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
CLRN1P58418 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
CLRN1P58418 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
CLRN1P58418 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
CLRN1P58418 SUN3-201ENST00000297325 1416 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.47
CLRN1P58418 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.9□□□□□ -1.47
CLRN1P58418 CALB1-208ENST00000518457 1490 ntTSL 2 BASIC5.9□□□□□ -1.47
CLRN1P58418 MKI67P1-201ENST00000604297 1460 ntBASIC5.9□□□□□ -1.47
CLRN1P58418 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
CLRN1P58418 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
CLRN1P58418 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CLRN1P58418 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC5.89□□□□□ -1.47
CLRN1P58418 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
CLRN1P58418 ZNF849P-201ENST00000594711 1566 ntBASIC5.89□□□□□ -1.47
CLRN1P58418 RNASE13-201ENST00000382951 1607 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CLRN1P58418 AP000641.1-201ENST00000531988 1639 ntBASIC5.89□□□□□ -1.47
CLRN1P58418 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
CLRN1P58418 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CLRN1P58418 NARS2-204ENST00000528850 2137 ntTSL 5 BASIC5.89□□□□□ -1.47
CLRN1P58418 LINC01505-203ENST00000435485 1686 ntTSL 5 BASIC5.89□□□□□ -1.47
CLRN1P58418 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
CLRN1P58418 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC5.89□□□□□ -1.47
CLRN1P58418 ZNF438-201ENST00000331737 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
CLRN1P58418 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC5.89□□□□□ -1.47
CLRN1P58418 AC009135.2-201ENST00000624136 1768 ntBASIC5.89□□□□□ -1.47
CLRN1P58418 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CLRN1P58418 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CLRN1P58418 RNA5SP321-201ENST00000362722 111 ntBASIC5.89□□□□□ -1.47
CLRN1P58418 RNA5SP382-201ENST00000363355 112 ntBASIC5.89□□□□□ -1.47
CLRN1P58418 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC5.89□□□□□ -1.47
CLRN1P58418 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CLRN1P58418 AC074375.1-201ENST00000372993 192 ntBASIC5.89□□□□□ -1.47
CLRN1P58418 AL137847.1-201ENST00000416473 444 ntTSL 2 BASIC5.89□□□□□ -1.47
CLRN1P58418 CFAP58-AS1-201ENST00000435434 795 ntTSL 2 BASIC5.89□□□□□ -1.47
CLRN1P58418 LRTOMT-209ENST00000440313 253 ntTSL 3 BASIC5.89□□□□□ -1.47
CLRN1P58418 AC004470.1-201ENST00000442155 382 ntTSL 5 BASIC5.89□□□□□ -1.47
CLRN1P58418 MTND1P29-201ENST00000448112 647 ntBASIC5.89□□□□□ -1.47
CLRN1P58418 CCNB1IP1P3-201ENST00000454702 829 ntBASIC5.89□□□□□ -1.47
CLRN1P58418 TPTE2P5-203ENST00000458118 728 ntBASIC5.89□□□□□ -1.47
CLRN1P58418 RN7SKP198-201ENST00000459286 306 ntBASIC5.89□□□□□ -1.47
CLRN1P58418 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CLRN1P58418 VAMP3-202ENST00000470357 954 ntTSL 3 BASIC5.89□□□□□ -1.47
CLRN1P58418 AC011037.1-201ENST00000483964 558 ntBASIC5.89□□□□□ -1.47
CLRN1P58418 H3F3AP3-201ENST00000497682 407 ntBASIC5.89□□□□□ -1.47
CLRN1P58418 AC091435.1-201ENST00000505442 584 ntBASIC5.89□□□□□ -1.47
CLRN1P58418 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC5.89□□□□□ -1.47
CLRN1P58418 AC074087.1-201ENST00000512059 724 ntBASIC5.89□□□□□ -1.47
CLRN1P58418 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC5.89□□□□□ -1.47
CLRN1P58418 AC023866.2-201ENST00000521378 387 ntTSL 3 BASIC5.89□□□□□ -1.47
CLRN1P58418 AC087373.1-201ENST00000524920 491 ntBASIC5.89□□□□□ -1.47
CLRN1P58418 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC5.89□□□□□ -1.47
CLRN1P58418 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC5.89□□□□□ -1.47
CLRN1P58418 OR11H12-201ENST00000550708 1085 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
CLRN1P58418 AL162632.2-201ENST00000553933 399 ntBASIC5.89□□□□□ -1.47
CLRN1P58418 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC5.89□□□□□ -1.47
CLRN1P58418 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC5.89□□□□□ -1.47
CLRN1P58418 AC099511.1-201ENST00000564561 590 ntTSL 2 BASIC5.89□□□□□ -1.47
CLRN1P58418 AC067852.5-201ENST00000589299 310 ntBASIC5.89□□□□□ -1.47
CLRN1P58418 OR7E19P-202ENST00000589942 844 ntBASIC5.89□□□□□ -1.47
CLRN1P58418 AC006305.3-201ENST00000590589 454 ntTSL 2 BASIC5.89□□□□□ -1.47
CLRN1P58418 AC124856.1-201ENST00000600819 896 ntBASIC5.89□□□□□ -1.47
CLRN1P58418 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC5.89□□□□□ -1.47
CLRN1P58418 AC005377.1-201ENST00000605126 456 ntBASIC5.89□□□□□ -1.47
CLRN1P58418 AC097467.4-201ENST00000605504 141 ntBASIC5.89□□□□□ -1.47
CLRN1P58418 AC007349.4-201ENST00000608114 532 ntBASIC5.89□□□□□ -1.47
CLRN1P58418 GLYATL1-219ENST00000612196 909 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
CLRN1P58418 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC5.89□□□□□ -1.47
CLRN1P58418 SNX18P10-201ENST00000625014 519 ntBASIC5.89□□□□□ -1.47
CLRN1P58418 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC5.89□□□□□ -1.47
CLRN1P58418 AC027559.1-201ENST00000636288 271 ntBASIC5.89□□□□□ -1.47
CLRN1P58418 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CLRN1P58418 PARP4P1-201ENST00000435945 2337 ntBASIC5.89□□□□□ -1.47
CLRN1P58418 CCR2-204ENST00000445132 2386 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CLRN1P58418 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CLRN1P58418 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
CLRN1P58418 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
CLRN1P58418 AC019117.1-201ENST00000636929 1462 ntTSL 5 BASIC5.89□□□□□ -1.47
CLRN1P58418 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CLRN1P58418 NDUFA4-201ENST00000339600 2130 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CLRN1P58418 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC5.89□□□□□ -1.47
CLRN1P58418 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CLRN1P58418 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
CLRN1P58418 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CLRN1P58418 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC5.88□□□□□ -1.47
CLRN1P58418 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC5.88□□□□□ -1.47
CLRN1P58418 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CLRN1P58418 AC009220.2-201ENST00000489759 1751 ntBASIC5.88□□□□□ -1.47
CLRN1P58418 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
CLRN1P58418 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CLRN1P58418 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC5.88□□□□□ -1.47
CLRN1P58418 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC5.88□□□□□ -1.47
CLRN1P58418 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
CLRN1P58418 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC5.88□□□□□ -1.47
CLRN1P58418 DNM1P47-203ENST00000571780 12667 ntBASIC5.88□□□□□ -1.47
CLRN1P58418 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CLRN1P58418 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CLRN1P58418 SCG5-201ENST00000300175 1238 ntAPPRIS P4 TSL 1 (best) BASIC5.88□□□□□ -1.47
CLRN1P58418 OR52H1-201ENST00000322653 1057 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 280.7 ms