Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC009962.1-201ENST00000567327 3813 ntBASIC6.84□□□□□ -1.31
BRCA1P38398 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC6.84□□□□□ -1.31
BRCA1P38398 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC6.84□□□□□ -1.31
BRCA1P38398 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
BRCA1P38398 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC6.84□□□□□ -1.31
BRCA1P38398 HEPH-209ENST00000519389 6013 ntAPPRIS P3 TSL 1 (best) BASIC6.84□□□□□ -1.31
BRCA1P38398 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC6.84□□□□□ -1.32
BRCA1P38398 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.32
BRCA1P38398 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC6.84□□□□□ -1.32
BRCA1P38398 AC012618.3-205ENST00000637896 1496 ntBASIC6.84□□□□□ -1.32
BRCA1P38398 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC6.84□□□□□ -1.32
BRCA1P38398 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC6.84□□□□□ -1.32
BRCA1P38398 CASC19-221ENST00000641309 1382 ntBASIC6.84□□□□□ -1.32
BRCA1P38398 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC6.83□□□□□ -1.32
BRCA1P38398 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC6.83□□□□□ -1.32
BRCA1P38398 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC6.83□□□□□ -1.32
BRCA1P38398 BZW1P1-201ENST00000454901 1240 ntBASIC6.83□□□□□ -1.32
BRCA1P38398 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC6.83□□□□□ -1.32
BRCA1P38398 HNRNPDLP2-201ENST00000455248 751 ntBASIC6.83□□□□□ -1.32
BRCA1P38398 AC020898.1-201ENST00000474167 787 ntBASIC6.83□□□□□ -1.32
BRCA1P38398 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
BRCA1P38398 RN7SKP147-201ENST00000517154 244 ntBASIC6.83□□□□□ -1.32
BRCA1P38398 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC6.83□□□□□ -1.32
BRCA1P38398 ATP5J2P6-201ENST00000565203 266 ntBASIC6.83□□□□□ -1.32
BRCA1P38398 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC6.83□□□□□ -1.32
BRCA1P38398 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC6.83□□□□□ -1.32
BRCA1P38398 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC6.83□□□□□ -1.32
BRCA1P38398 AC068831.8-201ENST00000620171 435 ntBASIC6.83□□□□□ -1.32
BRCA1P38398 AP000346.3-201ENST00000622821 210 ntBASIC6.83□□□□□ -1.32
BRCA1P38398 TLN2-209ENST00000561311 11880 ntAPPRIS P1 TSL 5 BASIC6.83□□□□□ -1.32
BRCA1P38398 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
BRCA1P38398 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC6.83□□□□□ -1.32
BRCA1P38398 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC6.83□□□□□ -1.32
BRCA1P38398 STAMBP-201ENST00000339566 6277 ntAPPRIS P1 TSL 5 BASIC6.83□□□□□ -1.32
BRCA1P38398 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC6.83□□□□□ -1.32
BRCA1P38398 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
BRCA1P38398 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC6.83□□□□□ -1.32
BRCA1P38398 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
BRCA1P38398 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC6.83□□□□□ -1.32
BRCA1P38398 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC6.83□□□□□ -1.32
BRCA1P38398 SMARCA2-252ENST00000636559 6853 ntTSL 2 BASIC6.83□□□□□ -1.32
BRCA1P38398 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
BRCA1P38398 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
BRCA1P38398 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
BRCA1P38398 ATP10B-202ENST00000327245 7566 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
BRCA1P38398 RN7SKP126-201ENST00000411143 300 ntBASIC6.83□□□□□ -1.32
BRCA1P38398 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC6.83□□□□□ -1.32
BRCA1P38398 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
BRCA1P38398 AC092801.1-201ENST00000443763 581 ntTSL 3 BASIC6.83□□□□□ -1.32
BRCA1P38398 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC6.83□□□□□ -1.32
BRCA1P38398 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC6.83□□□□□ -1.32
BRCA1P38398 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC6.83□□□□□ -1.32
BRCA1P38398 MAL2-207ENST00000522828 603 ntTSL 3 BASIC6.83□□□□□ -1.32
BRCA1P38398 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC6.83□□□□□ -1.32
BRCA1P38398 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC6.83□□□□□ -1.32
BRCA1P38398 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC6.83□□□□□ -1.32
BRCA1P38398 AC009117.1-201ENST00000563948 554 ntBASIC6.83□□□□□ -1.32
BRCA1P38398 RPL27-207ENST00000590864 569 ntTSL 2 BASIC6.83□□□□□ -1.32
BRCA1P38398 MIR132-201ENST00000591554 101 ntBASIC6.83□□□□□ -1.32
BRCA1P38398 AC068790.4-201ENST00000602474 263 ntBASIC6.83□□□□□ -1.32
BRCA1P38398 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
BRCA1P38398 AC009704.2-201ENST00000618739 483 ntBASIC6.83□□□□□ -1.32
BRCA1P38398 CLCN3-209ENST00000513761 6692 ntAPPRIS ALT1 TSL 1 (best) BASIC6.83□□□□□ -1.32
BRCA1P38398 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC6.83□□□□□ -1.32
BRCA1P38398 LINC01616-201ENST00000561816 2280 ntBASIC6.83□□□□□ -1.32
BRCA1P38398 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC6.82□□□□□ -1.32
BRCA1P38398 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC6.82□□□□□ -1.32
BRCA1P38398 OR55B1P-203ENST00000641518 2602 ntBASIC6.82□□□□□ -1.32
BRCA1P38398 ZC3H13-201ENST00000242848 8018 ntAPPRIS ALT2 TSL 5 BASIC6.82□□□□□ -1.32
BRCA1P38398 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
BRCA1P38398 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC6.82□□□□□ -1.32
BRCA1P38398 DIO2-201ENST00000422005 6272 ntTSL 5 BASIC6.82□□□□□ -1.32
BRCA1P38398 NEUROD4-201ENST00000242994 3953 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
BRCA1P38398 AP001043.1-202ENST00000380931 5027 ntTSL 2 BASIC6.82□□□□□ -1.32
BRCA1P38398 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
BRCA1P38398 CTNND1-222ENST00000529919 4780 ntTSL 5 BASIC6.82□□□□□ -1.32
BRCA1P38398 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
BRCA1P38398 COL21A1-203ENST00000370819 4094 ntAPPRIS ALT1 TSL 1 (best) BASIC6.82□□□□□ -1.32
BRCA1P38398 MITF-203ENST00000328528 4680 ntTSL 5 BASIC6.82□□□□□ -1.32
BRCA1P38398 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC6.82□□□□□ -1.32
BRCA1P38398 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC6.82□□□□□ -1.32
BRCA1P38398 AC079922.1-201ENST00000443291 359 ntBASIC6.82□□□□□ -1.32
BRCA1P38398 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC6.82□□□□□ -1.32
BRCA1P38398 AC092647.2-201ENST00000452998 253 ntBASIC6.82□□□□□ -1.32
BRCA1P38398 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC6.82□□□□□ -1.32
BRCA1P38398 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC6.82□□□□□ -1.32
BRCA1P38398 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC6.82□□□□□ -1.32
BRCA1P38398 MAL2-208ENST00000523307 556 ntTSL 4 BASIC6.82□□□□□ -1.32
BRCA1P38398 AC083809.1-201ENST00000615051 472 ntBASIC6.82□□□□□ -1.32
BRCA1P38398 NAA60-237ENST00000615865 326 ntTSL 5 BASIC6.82□□□□□ -1.32
BRCA1P38398 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC6.82□□□□□ -1.32
BRCA1P38398 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC6.82□□□□□ -1.32
BRCA1P38398 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC6.82□□□□□ -1.32
BRCA1P38398 ZRANB1-201ENST00000359653 5695 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
BRCA1P38398 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
BRCA1P38398 ZNF585A-202ENST00000356958 6822 ntTSL 2 BASIC6.82□□□□□ -1.32
BRCA1P38398 AL391261.1-201ENST00000555712 1479 ntBASIC6.82□□□□□ -1.32
BRCA1P38398 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC6.82□□□□□ -1.32
BRCA1P38398 ZNF720-202ENST00000398696 1339 ntTSL 4 BASIC6.82□□□□□ -1.32
BRCA1P38398 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms