Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
BDNFP23560 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
BDNFP23560 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
BDNFP23560 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
BDNFP23560 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC6.52□□□□□ -1.37
BDNFP23560 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
BDNFP23560 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
BDNFP23560 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
BDNFP23560 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC6.52□□□□□ -1.37
BDNFP23560 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC6.52□□□□□ -1.37
BDNFP23560 SNORA11.3-201ENST00000408471 128 ntBASIC6.52□□□□□ -1.37
BDNFP23560 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC6.52□□□□□ -1.37
BDNFP23560 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC6.52□□□□□ -1.37
BDNFP23560 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC6.52□□□□□ -1.37
BDNFP23560 KCTD9P1-201ENST00000430462 1167 ntBASIC6.52□□□□□ -1.37
BDNFP23560 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
BDNFP23560 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC6.52□□□□□ -1.37
BDNFP23560 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC6.52□□□□□ -1.37
BDNFP23560 ATP5LP2-201ENST00000440646 311 ntBASIC6.52□□□□□ -1.37
BDNFP23560 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC6.52□□□□□ -1.37
BDNFP23560 PPIAP27-201ENST00000453800 265 ntBASIC6.52□□□□□ -1.37
BDNFP23560 LDHBP2-201ENST00000456969 1005 ntBASIC6.52□□□□□ -1.37
BDNFP23560 AC073594.1-201ENST00000462065 364 ntBASIC6.52□□□□□ -1.37
BDNFP23560 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC6.52□□□□□ -1.37
BDNFP23560 RN7SKP238-201ENST00000516483 249 ntBASIC6.52□□□□□ -1.37
BDNFP23560 AP005639.1-201ENST00000526939 192 ntBASIC6.52□□□□□ -1.37
BDNFP23560 AC027369.2-201ENST00000528030 440 ntBASIC6.52□□□□□ -1.37
BDNFP23560 RPA2P3-201ENST00000533268 770 ntBASIC6.52□□□□□ -1.37
BDNFP23560 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC6.52□□□□□ -1.37
BDNFP23560 AP002373.2-201ENST00000541631 1060 ntBASIC6.52□□□□□ -1.37
BDNFP23560 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC6.52□□□□□ -1.37
BDNFP23560 AC079905.1-201ENST00000549280 475 ntBASIC6.52□□□□□ -1.37
BDNFP23560 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC6.52□□□□□ -1.37
BDNFP23560 NDUFA5P11-201ENST00000567995 343 ntBASIC6.52□□□□□ -1.37
BDNFP23560 NPIPB1P-202ENST00000588786 828 ntBASIC6.52□□□□□ -1.37
BDNFP23560 AC091193.1-201ENST00000604640 448 ntBASIC6.52□□□□□ -1.37
BDNFP23560 AC008555.7-201ENST00000605008 583 ntBASIC6.52□□□□□ -1.37
BDNFP23560 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC6.52□□□□□ -1.37
BDNFP23560 SNORA11.6-201ENST00000619030 128 ntBASIC6.52□□□□□ -1.37
BDNFP23560 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC6.52□□□□□ -1.37
BDNFP23560 AL359742.1-201ENST00000622497 540 ntBASIC6.52□□□□□ -1.37
BDNFP23560 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC6.52□□□□□ -1.37
BDNFP23560 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC6.52□□□□□ -1.37
BDNFP23560 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
BDNFP23560 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC6.52□□□□□ -1.37
BDNFP23560 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
BDNFP23560 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
BDNFP23560 NXF4-202ENST00000416098 1465 ntBASIC6.52□□□□□ -1.37
BDNFP23560 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
BDNFP23560 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
BDNFP23560 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
BDNFP23560 FTO-215ENST00000636491 1676 ntTSL 5 BASIC6.52□□□□□ -1.37
BDNFP23560 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
BDNFP23560 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC6.52□□□□□ -1.37
BDNFP23560 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC6.51□□□□□ -1.37
BDNFP23560 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC6.51□□□□□ -1.37
BDNFP23560 QRSL1P1-201ENST00000400977 1540 ntBASIC6.51□□□□□ -1.37
BDNFP23560 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
BDNFP23560 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC6.51□□□□□ -1.37
BDNFP23560 DOCK11P1-201ENST00000553480 5932 ntBASIC6.51□□□□□ -1.37
BDNFP23560 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
BDNFP23560 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
BDNFP23560 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
BDNFP23560 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC6.51□□□□□ -1.37
BDNFP23560 AL607077.1-201ENST00000401718 499 ntBASIC6.51□□□□□ -1.37
BDNFP23560 MTCYBP29-201ENST00000436327 1006 ntBASIC6.51□□□□□ -1.37
BDNFP23560 DNAJA1P5-201ENST00000440278 943 ntBASIC6.51□□□□□ -1.37
BDNFP23560 SEPT14P12-201ENST00000442280 560 ntBASIC6.51□□□□□ -1.37
BDNFP23560 RPS10P18-201ENST00000442662 495 ntBASIC6.51□□□□□ -1.37
BDNFP23560 NDUFA5P5-201ENST00000468361 342 ntBASIC6.51□□□□□ -1.37
BDNFP23560 AK5-208ENST00000478255 556 ntTSL 2 BASIC6.51□□□□□ -1.37
BDNFP23560 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC6.51□□□□□ -1.37
BDNFP23560 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC6.51□□□□□ -1.37
BDNFP23560 BICD1-206ENST00000551086 423 ntTSL 3 BASIC6.51□□□□□ -1.37
BDNFP23560 SULT1C2P2-201ENST00000562517 294 ntBASIC6.51□□□□□ -1.37
BDNFP23560 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC6.51□□□□□ -1.37
BDNFP23560 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC6.51□□□□□ -1.37
BDNFP23560 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC6.51□□□□□ -1.37
BDNFP23560 AL138895.2-201ENST00000603019 178 ntBASIC6.51□□□□□ -1.37
BDNFP23560 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC6.51□□□□□ -1.37
BDNFP23560 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC6.51□□□□□ -1.37
BDNFP23560 TRIM51GP-201ENST00000534741 1350 ntBASIC6.51□□□□□ -1.37
BDNFP23560 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
BDNFP23560 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC6.51□□□□□ -1.37
BDNFP23560 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC6.51□□□□□ -1.37
BDNFP23560 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
BDNFP23560 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC6.51□□□□□ -1.37
BDNFP23560 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
BDNFP23560 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC6.51□□□□□ -1.37
BDNFP23560 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC6.51□□□□□ -1.37
BDNFP23560 DMD-228ENST00000541735 7080 ntTSL 5 BASIC6.51□□□□□ -1.37
BDNFP23560 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
BDNFP23560 AC008627.1-201ENST00000517511 1704 ntBASIC6.5□□□□□ -1.37
BDNFP23560 AC012254.3-201ENST00000591183 2117 ntBASIC6.5□□□□□ -1.37
BDNFP23560 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
BDNFP23560 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
BDNFP23560 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
BDNFP23560 RPS7P8-201ENST00000418311 581 ntBASIC6.5□□□□□ -1.37
BDNFP23560 RPL35AP31-201ENST00000418340 337 ntBASIC6.5□□□□□ -1.37
BDNFP23560 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC6.5□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 113.1 ms