Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 C5orf58-205ENST00000524171 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 AC069240.2-201ENST00000550242 609 ntBASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 CNIH1-205ENST00000556113 523 ntAPPRIS ALT1 TSL 2 BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 AC126323.4-201ENST00000566935 234 ntBASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 AC091932.1-201ENST00000569381 427 ntBASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 AC005208.1-202ENST00000587325 725 ntTSL 3 BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 CCL23-203ENST00000615050 624 ntAPPRIS P3 TSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 AC103564.3-201ENST00000621194 220 ntBASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 JAKMIP2-AS1-202ENST00000627433 831 ntTSL 3 BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 CD96-201ENST00000283285 4324 ntAPPRIS P4 TSL 1 (best) BASIC7.65□□□□□ -1.19
CCDC39Q9UFE4 PRKAR1A-204ENST00000536854 3697 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.19
CCDC39Q9UFE4 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC7.65□□□□□ -1.19
CCDC39Q9UFE4 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 AC244100.3-202ENST00000617328 1721 ntTSL 2 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 AC096992.2-201ENST00000609553 1684 ntBASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 RN7SKP118-201ENST00000364331 330 ntBASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 RNU4-75P-201ENST00000364621 146 ntBASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 RN7SKP237-201ENST00000364663 301 ntBASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 MIR99A-201ENST00000384906 81 ntBASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 NFU1P1-201ENST00000413128 774 ntBASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 MICG-208ENST00000416822 132 ntBASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 AL161742.1-201ENST00000418154 584 ntBASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 KCND3-AS1-201ENST00000419258 383 ntTSL 3 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 MTND4LP13-201ENST00000425022 298 ntBASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 AL445528.1-201ENST00000426330 420 ntBASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 AC245140.1-201ENST00000433825 341 ntTSL 5 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 MAGI2-AS3-210ENST00000448636 798 ntTSL 5 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 ST13P21-201ENST00000453250 1098 ntBASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 AC016722.1-201ENST00000453936 652 ntTSL 5 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 MTCO2P18-201ENST00000457151 658 ntBASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 RN7SL165P-201ENST00000477476 291 ntBASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 RN7SL849P-201ENST00000485236 295 ntBASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 RPL23AP80-201ENST00000495605 424 ntBASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 MTCO2P32-201ENST00000514865 403 ntBASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 SNORA19.3-201ENST00000516165 130 ntBASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 RNA5SP318-201ENST00000516352 92 ntBASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 AC104997.1-201ENST00000519761 717 ntBASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 AC008691.1-202ENST00000521472 811 ntTSL 3 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 LINC01559-203ENST00000531049 683 ntTSL 3 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 AC022880.1-201ENST00000534017 973 ntBASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 AC025419.1-203ENST00000540652 726 ntTSL 3 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 PSMA3-AS1-206ENST00000555037 446 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 AC004232.1-201ENST00000571388 208 ntBASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 MIR4420-201ENST00000583944 77 ntBASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 AL136084.2-214ENST00000587726 716 ntTSL 5 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 FXYD6P1-201ENST00000604857 285 ntBASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 AC015574.1-202ENST00000616588 456 ntTSL 5 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 CXADRP3-202ENST00000617265 1100 ntBASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 AC007494.3-201ENST00000624660 743 ntBASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 AL160394.1-201ENST00000624765 724 ntBASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 AL008636.1-201ENST00000625038 1018 ntBASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 DTHD1-206ENST00000639862 3819 ntTSL 5 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 OR7A1P-202ENST00000641542 1158 ntBASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 IL5RA-209ENST00000446632 2514 ntAPPRIS P4 TSL 5 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC39Q9UFE4 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 ARHGEF3-214ENST00000497267 2197 ntTSL 2 BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 EEF1A1P24-201ENST00000451469 1378 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 MGST2-201ENST00000265498 801 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 HMGN2-201ENST00000361427 1191 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 ENSA-207ENST00000362052 703 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 SMPX-201ENST00000379494 938 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 RNU6-517P-201ENST00000384362 110 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 RNA5SP176-201ENST00000390956 110 ntBASIC7.63□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms