Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
HSPG2P98160 NEXMIF-201ENST00000055682 11719 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HSPG2P98160 GABRA4-201ENST00000264318 11973 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HSPG2P98160 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.87
HSPG2P98160 DLG1-202ENST00000357674 4931 ntAPPRIS ALT1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HSPG2P98160 FAM13A-202ENST00000395002 4945 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
HSPG2P98160 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC3.4□□□□□ -1.87
HSPG2P98160 TRPM1-201ENST00000256552 5514 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
HSPG2P98160 THAP12P4-201ENST00000528321 2266 ntBASIC3.4□□□□□ -1.87
HSPG2P98160 RNU4-2-201ENST00000365668 141 ntBASIC3.4□□□□□ -1.87
HSPG2P98160 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
HSPG2P98160 SNORA48.7-201ENST00000391302 135 ntBASIC3.4□□□□□ -1.87
HSPG2P98160 RN7SKP263-201ENST00000411194 309 ntBASIC3.4□□□□□ -1.87
HSPG2P98160 AL136455.1-201ENST00000441083 1240 ntBASIC3.4□□□□□ -1.87
HSPG2P98160 AC093720.1-201ENST00000505681 714 ntBASIC3.4□□□□□ -1.87
HSPG2P98160 IGKV2D-10-201ENST00000520194 281 ntBASIC3.4□□□□□ -1.87
HSPG2P98160 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC3.4□□□□□ -1.87
HSPG2P98160 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 TANC2-201ENST00000389520 6404 ntTSL 5 BASIC3.39□□□□□ -1.87
HSPG2P98160 ATP6V1C1-201ENST00000395862 5612 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 AC016705.2-202ENST00000559008 6878 ntTSL 3 BASIC3.39□□□□□ -1.87
HSPG2P98160 SLC24A4-205ENST00000532405 9950 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 PGK2-201ENST00000304801 1657 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
HSPG2P98160 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 GAGE1-204ENST00000619375 2873 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
HSPG2P98160 IKZF3-203ENST00000346872 9667 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC3.39□□□□□ -1.87
HSPG2P98160 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC3.39□□□□□ -1.87
HSPG2P98160 MAP4-207ENST00000426837 8920 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
HSPG2P98160 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
HSPG2P98160 ASB4-202ENST00000325885 3825 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.39□□□□□ -1.87
HSPG2P98160 AL138831.1-201ENST00000415144 209 ntTSL 3 BASIC3.39□□□□□ -1.87
HSPG2P98160 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC3.39□□□□□ -1.87
HSPG2P98160 BMS1P19-201ENST00000433925 393 ntBASIC3.39□□□□□ -1.87
HSPG2P98160 AC093414.1-201ENST00000434712 514 ntBASIC3.39□□□□□ -1.87
HSPG2P98160 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC3.39□□□□□ -1.87
HSPG2P98160 AC109327.1-201ENST00000471666 403 ntBASIC3.39□□□□□ -1.87
HSPG2P98160 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 PARP1P2-201ENST00000556806 195 ntBASIC3.39□□□□□ -1.87
HSPG2P98160 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC3.39□□□□□ -1.87
HSPG2P98160 HIRAP1-201ENST00000605318 787 ntBASIC3.39□□□□□ -1.87
HSPG2P98160 AC092653.1-201ENST00000608509 531 ntBASIC3.39□□□□□ -1.87
HSPG2P98160 SNORD91A-202ENST00000609620 191 ntBASIC3.39□□□□□ -1.87
HSPG2P98160 TCL6_3.1-201ENST00000619064 137 ntBASIC3.39□□□□□ -1.87
HSPG2P98160 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC3.39□□□□□ -1.87
HSPG2P98160 AHCTF1-202ENST00000366508 8751 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
HSPG2P98160 TACC2-202ENST00000334433 9377 ntTSL 5 BASIC3.39□□□□□ -1.87
HSPG2P98160 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC3.39□□□□□ -1.87
HSPG2P98160 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 GK5-201ENST00000392993 9837 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 SIPA1L2-201ENST00000262861 6555 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 OR2A42-202ENST00000641810 4946 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
HSPG2P98160 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC3.39□□□□□ -1.87
HSPG2P98160 TRIM44-201ENST00000299413 12964 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
HSPG2P98160 FCGR1B-210ENST00000623603 1581 ntAPPRIS P2 TSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC3.39□□□□□ -1.87
HSPG2P98160 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC3.39□□□□□ -1.87
HSPG2P98160 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
HSPG2P98160 MYL6P5-201ENST00000412707 459 ntBASIC3.39□□□□□ -1.87
HSPG2P98160 AC019205.1-201ENST00000421830 730 ntBASIC3.39□□□□□ -1.87
HSPG2P98160 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.39□□□□□ -1.87
HSPG2P98160 RPL23AP40-201ENST00000487630 390 ntBASIC3.39□□□□□ -1.87
HSPG2P98160 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC3.39□□□□□ -1.87
HSPG2P98160 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC3.39□□□□□ -1.87
HSPG2P98160 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC3.39□□□□□ -1.87
HSPG2P98160 STAMBP-202ENST00000394070 6691 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 RGMA-201ENST00000329082 11350 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 KALRN-201ENST00000240874 6537 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 KALRN-211ENST00000460856 6509 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 PER3-202ENST00000377532 6279 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 HP1BP3-201ENST00000312239 3938 ntAPPRIS P1 TSL 2 BASIC3.39□□□□□ -1.87
HSPG2P98160 DPY19L1P1-201ENST00000417811 2594 ntBASIC3.39□□□□□ -1.87
HSPG2P98160 AL731556.1-201ENST00000394628 3711 ntBASIC3.39□□□□□ -1.87
HSPG2P98160 PLEKHA3-201ENST00000234453 13880 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 MID1-201ENST00000317552 6463 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HSPG2P98160 ERG-208ENST00000417133 5023 ntAPPRIS ALT1 TSL 2 BASIC3.39□□□□□ -1.87
HSPG2P98160 RNU4-39P-201ENST00000362455 127 ntBASIC3.39□□□□□ -1.87
HSPG2P98160 RPS23P2-201ENST00000463671 415 ntBASIC3.39□□□□□ -1.87
HSPG2P98160 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC3.39□□□□□ -1.87
HSPG2P98160 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC3.39□□□□□ -1.87
HSPG2P98160 AC068831.4-201ENST00000556118 109 ntBASIC3.39□□□□□ -1.87
HSPG2P98160 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC3.39□□□□□ -1.87
HSPG2P98160 MIR4737-201ENST00000583979 81 ntBASIC3.39□□□□□ -1.87
HSPG2P98160 AC073575.2-201ENST00000614212 627 ntBASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms