Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC011933.2-201ENST00000578539 2790 ntBASIC3.93□□□□□ -1.78
PRKDCP78527 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
PRKDCP78527 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
PRKDCP78527 SEMA3E-201ENST00000307792 6476 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
PRKDCP78527 ZNF286B-201ENST00000285274 5145 ntTSL 3 BASIC3.93□□□□□ -1.78
PRKDCP78527 SOX5-202ENST00000381381 3991 ntTSL 5 BASIC3.93□□□□□ -1.78
PRKDCP78527 ARHGAP32-202ENST00000392657 6556 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
PRKDCP78527 Y_RNA.333-201ENST00000365274 102 ntBASIC3.93□□□□□ -1.78
PRKDCP78527 MYL6P5-201ENST00000412707 459 ntBASIC3.93□□□□□ -1.78
PRKDCP78527 DDX39BP1-205ENST00000422507 192 ntBASIC3.93□□□□□ -1.78
PRKDCP78527 RPL12P34-201ENST00000424532 479 ntBASIC3.93□□□□□ -1.78
PRKDCP78527 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC3.93□□□□□ -1.78
PRKDCP78527 AL353748.1-201ENST00000440753 474 ntBASIC3.93□□□□□ -1.78
PRKDCP78527 AC073581.1-201ENST00000519036 575 ntBASIC3.93□□□□□ -1.78
PRKDCP78527 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC3.93□□□□□ -1.78
PRKDCP78527 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.93□□□□□ -1.78
PRKDCP78527 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC3.93□□□□□ -1.78
PRKDCP78527 AC020891.2-201ENST00000559672 776 ntTSL 2 BASIC3.93□□□□□ -1.78
PRKDCP78527 AL121834.1-201ENST00000572284 509 ntBASIC3.93□□□□□ -1.78
PRKDCP78527 AP000769.2-201ENST00000602344 396 ntBASIC3.93□□□□□ -1.78
PRKDCP78527 AC009597.2-201ENST00000604659 592 ntBASIC3.93□□□□□ -1.78
PRKDCP78527 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC3.93□□□□□ -1.78
PRKDCP78527 TTC21A-203ENST00000431162 4209 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
PRKDCP78527 AL391261.1-201ENST00000555712 1479 ntBASIC3.92□□□□□ -1.78
PRKDCP78527 PDE6A-201ENST00000255266 5642 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
PRKDCP78527 GREB1L-201ENST00000269218 5600 ntTSL 5 BASIC3.92□□□□□ -1.78
PRKDCP78527 EDA-213ENST00000616899 4643 ntTSL 5 BASIC3.92□□□□□ -1.78
PRKDCP78527 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
PRKDCP78527 ZMYM3-205ENST00000373984 5253 ntTSL 5 BASIC3.92□□□□□ -1.78
PRKDCP78527 BX322650.1-201ENST00000332359 2143 ntBASIC3.92□□□□□ -1.78
PRKDCP78527 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
PRKDCP78527 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
PRKDCP78527 AC009948.3-201ENST00000603415 1798 ntBASIC3.92□□□□□ -1.78
PRKDCP78527 PTPN3-201ENST00000262539 6832 ntTSL 5 BASIC3.92□□□□□ -1.78
PRKDCP78527 STXBP5-203ENST00000367480 3297 ntTSL 5 BASIC3.92□□□□□ -1.78
PRKDCP78527 AL512624.2-201ENST00000621705 2566 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
PRKDCP78527 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
PRKDCP78527 RNA5SP455-201ENST00000365190 119 ntBASIC3.92□□□□□ -1.78
PRKDCP78527 RNU4-2-201ENST00000365668 141 ntBASIC3.92□□□□□ -1.78
PRKDCP78527 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.92□□□□□ -1.78
PRKDCP78527 AP002812.1-201ENST00000495378 474 ntBASIC3.92□□□□□ -1.78
PRKDCP78527 AC023424.1-201ENST00000496058 459 ntBASIC3.92□□□□□ -1.78
PRKDCP78527 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC3.92□□□□□ -1.78
PRKDCP78527 DSTNP2-201ENST00000504533 515 ntBASIC3.92□□□□□ -1.78
PRKDCP78527 AC020593.1-201ENST00000507399 299 ntBASIC3.92□□□□□ -1.78
PRKDCP78527 AC026726.1-201ENST00000512859 601 ntBASIC3.92□□□□□ -1.78
PRKDCP78527 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC3.92□□□□□ -1.78
PRKDCP78527 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC3.92□□□□□ -1.78
PRKDCP78527 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC3.92□□□□□ -1.78
PRKDCP78527 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC3.92□□□□□ -1.78
PRKDCP78527 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
PRKDCP78527 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
PRKDCP78527 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
PRKDCP78527 SLITRK1-201ENST00000377084 5189 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
PRKDCP78527 NRK-201ENST00000243300 8062 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
PRKDCP78527 REV3L-202ENST00000368802 10701 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
PRKDCP78527 POGK-202ENST00000367876 5754 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
PRKDCP78527 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
PRKDCP78527 LIMCH1-216ENST00000512820 5071 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
PRKDCP78527 PGK2-201ENST00000304801 1657 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
PRKDCP78527 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
PRKDCP78527 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
PRKDCP78527 ITM2B-202ENST00000378565 10137 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
PRKDCP78527 ERG-206ENST00000398911 4914 ntTSL 5 BASIC3.92□□□□□ -1.78
PRKDCP78527 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC3.92□□□□□ -1.78
PRKDCP78527 AC005154.2-201ENST00000438110 379 ntBASIC3.92□□□□□ -1.78
PRKDCP78527 FTH1P25-201ENST00000447665 469 ntBASIC3.92□□□□□ -1.78
PRKDCP78527 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.92□□□□□ -1.78
PRKDCP78527 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC3.92□□□□□ -1.78
PRKDCP78527 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC3.92□□□□□ -1.78
PRKDCP78527 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC3.92□□□□□ -1.78
PRKDCP78527 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC3.92□□□□□ -1.78
PRKDCP78527 PRR26-201ENST00000381489 7250 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
PRKDCP78527 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC3.92□□□□□ -1.78
PRKDCP78527 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
PRKDCP78527 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC3.92□□□□□ -1.78
PRKDCP78527 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC3.92□□□□□ -1.78
PRKDCP78527 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
PRKDCP78527 ZNF23-204ENST00000428724 1932 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
PRKDCP78527 SZT2-209ENST00000562955 13968 ntAPPRIS P2 TSL 5 BASIC3.92□□□□□ -1.78
PRKDCP78527 SCN5A-208ENST00000450102 6284 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
PRKDCP78527 ATL3-201ENST00000398868 7135 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
PRKDCP78527 CACNA1C-202ENST00000335762 6968 ntAPPRIS ALT2 TSL 5 BASIC3.92□□□□□ -1.78
PRKDCP78527 PDE4DIP-204ENST00000369351 4922 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
PRKDCP78527 AC130304.1-201ENST00000622942 2385 ntBASIC3.92□□□□□ -1.78
PRKDCP78527 CAST-202ENST00000325674 3356 ntTSL 5 BASIC3.92□□□□□ -1.78
PRKDCP78527 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
PRKDCP78527 SETD7-207ENST00000608958 5281 ntTSL 5 BASIC3.92□□□□□ -1.78
PRKDCP78527 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
PRKDCP78527 TULP4-201ENST00000367094 5170 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
PRKDCP78527 RN7SKP145-201ENST00000363291 303 ntBASIC3.92□□□□□ -1.78
PRKDCP78527 AC068535.1-201ENST00000416008 471 ntTSL 3 BASIC3.92□□□□□ -1.78
PRKDCP78527 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC3.92□□□□□ -1.78
PRKDCP78527 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC3.92□□□□□ -1.78
PRKDCP78527 HMGB1P40-201ENST00000525121 540 ntBASIC3.92□□□□□ -1.78
PRKDCP78527 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC3.92□□□□□ -1.78
PRKDCP78527 AC022916.3-201ENST00000592961 742 ntBASIC3.92□□□□□ -1.78
PRKDCP78527 AC245389.1-201ENST00000605141 529 ntBASIC3.92□□□□□ -1.78
PRKDCP78527 NFIB-205ENST00000380959 8198 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
PRKDCP78527 GTF3C1-202ENST00000561623 7015 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms