Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 NDUFA12P1-201ENST00000455914 406 ntBASIC3.43□□□□□ -1.86
APOBP04114 AL161747.1-201ENST00000480068 358 ntBASIC3.43□□□□□ -1.86
APOBP04114 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC3.43□□□□□ -1.86
APOBP04114 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC3.43□□□□□ -1.86
APOBP04114 CASC22-202ENST00000628396 802 ntTSL 5 BASIC3.43□□□□□ -1.86
APOBP04114 MRPS23-201ENST00000313608 5621 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
APOBP04114 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC3.42□□□□□ -1.86
APOBP04114 TACC2-228ENST00000515273 9245 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 PCBP1-AS1-230ENST00000439670 2180 ntTSL 2 BASIC3.42□□□□□ -1.86
APOBP04114 ZNF107-204ENST00000423627 5773 ntTSL 5 BASIC3.42□□□□□ -1.86
APOBP04114 LRRC8B-203ENST00000439853 7474 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 AC011933.2-201ENST00000578539 2790 ntBASIC3.42□□□□□ -1.86
APOBP04114 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC3.42□□□□□ -1.86
APOBP04114 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 SVEP1-203ENST00000401783 12350 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
APOBP04114 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 FTH1P10-202ENST00000430907 550 ntBASIC3.42□□□□□ -1.86
APOBP04114 AC016712.1-201ENST00000431088 378 ntBASIC3.42□□□□□ -1.86
APOBP04114 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC3.42□□□□□ -1.86
APOBP04114 IGHVII-44-2-201ENST00000517728 250 ntBASIC3.42□□□□□ -1.86
APOBP04114 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.42□□□□□ -1.86
APOBP04114 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC3.42□□□□□ -1.86
APOBP04114 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 AL512782.1-201ENST00000603093 364 ntBASIC3.42□□□□□ -1.86
APOBP04114 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC3.42□□□□□ -1.86
APOBP04114 AC068724.3-201ENST00000625906 87 ntBASIC3.42□□□□□ -1.86
APOBP04114 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC3.42□□□□□ -1.86
APOBP04114 AP003119.3-201ENST00000566747 4192 ntBASIC3.42□□□□□ -1.86
APOBP04114 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 MIGA1-202ENST00000443751 6409 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 ACACB-201ENST00000338432 9360 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 AP000350.7-201ENST00000624923 8030 ntBASIC3.42□□□□□ -1.86
APOBP04114 SGMS2-202ENST00000394684 6149 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 NEUROD4-201ENST00000242994 3953 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC3.42□□□□□ -1.86
APOBP04114 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC3.42□□□□□ -1.86
APOBP04114 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC3.42□□□□□ -1.86
APOBP04114 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 DBIP1-201ENST00000401435 260 ntBASIC3.42□□□□□ -1.86
APOBP04114 RPS4XP9-201ENST00000405151 780 ntBASIC3.42□□□□□ -1.86
APOBP04114 RSL24D1P6-201ENST00000426934 401 ntBASIC3.42□□□□□ -1.86
APOBP04114 AL731534.1-201ENST00000434711 269 ntBASIC3.42□□□□□ -1.86
APOBP04114 RPS3AP38-201ENST00000435889 763 ntBASIC3.42□□□□□ -1.86
APOBP04114 AP006289.1-201ENST00000538089 277 ntBASIC3.42□□□□□ -1.86
APOBP04114 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC3.42□□□□□ -1.86
APOBP04114 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC3.42□□□□□ -1.86
APOBP04114 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC3.42□□□□□ -1.86
APOBP04114 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC3.42□□□□□ -1.86
APOBP04114 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 THAP12P9-201ENST00000503971 2360 ntBASIC3.42□□□□□ -1.86
APOBP04114 ADA2-203ENST00000399837 4505 ntAPPRIS P3 TSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 ADD2-201ENST00000264436 9267 ntAPPRIS P4 TSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
APOBP04114 BICC1-202ENST00000373886 5475 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 NEDD4L-204ENST00000382850 8251 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC3.42□□□□□ -1.86
APOBP04114 COL12A1-201ENST00000322507 11723 ntAPPRIS P2 TSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 RN7SKP151-201ENST00000410230 316 ntBASIC3.42□□□□□ -1.86
APOBP04114 TMA16P2-201ENST00000413187 601 ntBASIC3.42□□□□□ -1.86
APOBP04114 AC019205.1-201ENST00000421830 730 ntBASIC3.42□□□□□ -1.86
APOBP04114 AC093655.2-201ENST00000425735 631 ntBASIC3.42□□□□□ -1.86
APOBP04114 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC3.42□□□□□ -1.86
APOBP04114 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC3.42□□□□□ -1.86
APOBP04114 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC3.42□□□□□ -1.86
APOBP04114 MIR4277-201ENST00000578298 84 ntBASIC3.42□□□□□ -1.86
APOBP04114 MIR4429-201ENST00000580105 73 ntBASIC3.42□□□□□ -1.86
APOBP04114 AC060766.1-201ENST00000590824 627 ntBASIC3.42□□□□□ -1.86
APOBP04114 AC005962.2-201ENST00000611427 652 ntBASIC3.42□□□□□ -1.86
APOBP04114 ZBTB43-203ENST00000449886 5851 ntAPPRIS P1 TSL 3 BASIC3.42□□□□□ -1.86
APOBP04114 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
APOBP04114 USP3-201ENST00000268049 5311 ntTSL 5 BASIC3.42□□□□□ -1.86
APOBP04114 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
APOBP04114 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC3.42□□□□□ -1.86
APOBP04114 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
APOBP04114 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 NFAT5-208ENST00000566899 4914 ntAPPRIS ALT1 TSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 GABPB2-201ENST00000368916 1680 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
APOBP04114 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
APOBP04114 VPS8-210ENST00000446204 4721 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
APOBP04114 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
APOBP04114 KIRREL1-203ENST00000368172 6870 ntTSL 2 BASIC3.41□□□□□ -1.86
APOBP04114 AC009831.5-201ENST00000624000 3189 ntBASIC3.41□□□□□ -1.86
APOBP04114 EIF4E3-204ENST00000425534 9949 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
APOBP04114 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
APOBP04114 RNU6-398P-201ENST00000384143 109 ntBASIC3.41□□□□□ -1.86
APOBP04114 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC3.41□□□□□ -1.86
APOBP04114 RSU1P1-201ENST00000453416 441 ntBASIC3.41□□□□□ -1.86
APOBP04114 SLC25A51P1-201ENST00000468432 871 ntBASIC3.41□□□□□ -1.86
APOBP04114 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC3.41□□□□□ -1.86
APOBP04114 GTF2IP11-201ENST00000526931 420 ntBASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 126.4 ms