RNA–Protein interactions for RNA: ENST00000322507.12

COL12A1-201, Transcript of collagen type XII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL12A1, Length 11,723 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-201ENST00000322507 MYT1Q01538 1121 aa16.71■□□□□ 0.27
COL12A1-201ENST00000322507 PELP1Q8IZL8 1130 aaKnown RBP16.44■□□□□ 0.22
COL12A1-201ENST00000322507 TTBK1Q5TCY1 1321 aaPredicted RBP15.72■□□□□ 0.11
COL12A1-201ENST00000322507 DCAF8L2P0C7V8 631 aa15.63■□□□□ 0.09
COL12A1-201ENST00000322507 CCER1Q8TC90 406 aaPredicted RBP15.5■□□□□ 0.07
COL12A1-201ENST00000322507 YTHDC1Q96MU7 727 aaKnown RBP15.46■□□□□ 0.07
COL12A1-201ENST00000322507 ERICH6Q7L0X2 663 aa15.44■□□□□ 0.06
COL12A1-201ENST00000322507 NISCHQ9Y2I1 1504 aa15.42■□□□□ 0.06
COL12A1-201ENST00000322507 CENPBP07199 599 aaPredicted RBP14.98□□□□□ -0.01
COL12A1-201ENST00000322507 FAM9AQ8IZU1 332 aaPredicted RBP14.96□□□□□ -0.02
COL12A1-201ENST00000322507 SUPT5HO00267 1087 aaKnown RBP14.95□□□□□ -0.02
COL12A1-201ENST00000322507 APLP2Q06481 763 aa14.91□□□□□ -0.02
COL12A1-201ENST00000322507 ZEB1P37275 1124 aaPredicted RBP14.69□□□□□ -0.06
COL12A1-201ENST00000322507 RANGAP1P46060 587 aaPredicted RBP14.67□□□□□ -0.06
COL12A1-201ENST00000322507 GLIPR1L2Q4G1C9 344 aa14.57□□□□□ -0.08
COL12A1-201ENST00000322507 NEFLP07196 543 aa14.55□□□□□ -0.08
COL12A1-201ENST00000322507 SHROOM4Q9ULL8 1493 aa14.52□□□□□ -0.08
COL12A1-201ENST00000322507 DAXXQ9UER7 740 aaPredicted RBP14.46□□□□□ -0.1
COL12A1-201ENST00000322507 RTL5Q5HYW3 569 aaPredicted RBP14.37□□□□□ -0.11
COL12A1-201ENST00000322507 EHMT2Q96KQ7 1210 aa14.26□□□□□ -0.13
COL12A1-201ENST00000322507 PCGF6Q9BYE7 350 aa14.18□□□□□ -0.14
COL12A1-201ENST00000322507 TRIM41Q8WV44 630 aa14.14□□□□□ -0.15
COL12A1-201ENST00000322507 CLSPNQ9HAW4 1339 aa14.12□□□□□ -0.15
COL12A1-201ENST00000322507 MYT1LQ9UL68 1186 aa14.04□□□□□ -0.16
COL12A1-201ENST00000322507 ZNF316A6NFI3 1004 aaPredicted RBP14.04□□□□□ -0.16
COL12A1-201ENST00000322507 UBTFP17480 764 aaKnown RBP13.99□□□□□ -0.17
COL12A1-201ENST00000322507 TRIM26Q12899 539 aaPredicted RBP13.88□□□□□ -0.19
COL12A1-201ENST00000322507 ATP1B4Q9UN42 357 aaPredicted RBP13.85□□□□□ -0.19
COL12A1-201ENST00000322507 EIF5BO60841 1220 aaKnown RBP13.84□□□□□ -0.19
COL12A1-201ENST00000322507 POLR3GLQ9BT43 218 aa13.78□□□□□ -0.2
COL12A1-201ENST00000322507 TNNT2P45379 298 aaPredicted RBP13.77□□□□□ -0.2
COL12A1-201ENST00000322507 SLC24A1O60721 1099 aa13.7□□□□□ -0.22
COL12A1-201ENST00000322507 ANP32BQ92688 251 aaKnown RBP13.66□□□□□ -0.22
COL12A1-201ENST00000322507 NCLP19338 710 aaKnown RBP13.64□□□□□ -0.23
COL12A1-201ENST00000322507 HRCP23327 699 aa13.58□□□□□ -0.24
COL12A1-201ENST00000322507 CDK11BP21127 795 aaKnown RBP13.57□□□□□ -0.24
COL12A1-201ENST00000322507 TRIM44Q96DX7 344 aaPredicted RBP13.54□□□□□ -0.24
COL12A1-201ENST00000322507 CDK11AQ9UQ88 783 aaPredicted RBP13.46□□□□□ -0.25
COL12A1-201ENST00000322507 ZNF326Q5BKZ1 582 aaKnown RBP13.45□□□□□ -0.26
COL12A1-201ENST00000322507 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.45□□□□□ -0.26
COL12A1-201ENST00000322507 HNRNPUL2Q1KMD3 747 aaKnown RBP13.45□□□□□ -0.26
COL12A1-201ENST00000322507 ANP32AP39687 249 aaKnown RBP13.44□□□□□ -0.26
COL12A1-201ENST00000322507 DIEXFQ68CQ4 756 aaKnown RBP13.36□□□□□ -0.27
COL12A1-201ENST00000322507 ZBTB47Q9UFB7 747 aaPredicted RBP13.35□□□□□ -0.27
COL12A1-201ENST00000322507 PTMSP20962 102 aa13.31□□□□□ -0.28
COL12A1-201ENST00000322507 ITGAEP38570 1179 aa13.3□□□□□ -0.28
COL12A1-201ENST00000322507 PPARGC1BQ86YN6 1023 aaKnown RBP13.29□□□□□ -0.28
COL12A1-201ENST00000322507 CHIC1Q5VXU3 224 aa13.28□□□□□ -0.28
COL12A1-201ENST00000322507 ANP32CO43423 234 aa13.27□□□□□ -0.28
COL12A1-201ENST00000322507 NEFMP07197 916 aa13.26□□□□□ -0.29
COL12A1-201ENST00000322507 CALRP27797 417 aaKnown RBP13.24□□□□□ -0.29
COL12A1-201ENST00000322507 SLC4A1APQ9BWU0 796 aaKnown RBP13.24□□□□□ -0.29
COL12A1-201ENST00000322507 CCDC180Q9P1Z9 1646 aa13.2□□□□□ -0.3
COL12A1-201ENST00000322507 ANP32EQ9BTT0 268 aa13.17□□□□□ -0.3
COL12A1-201ENST00000322507 ERICH6BQ5W0A0 696 aa13.16□□□□□ -0.3
COL12A1-201ENST00000322507 FAM50AQ14320 339 aaKnown RBP13.16□□□□□ -0.3
COL12A1-201ENST00000322507 GTF3C3Q9Y5Q9 886 aa13.16□□□□□ -0.3
COL12A1-201ENST00000322507 ACIN1Q9UKV3 1341 aaKnown RBP13.14□□□□□ -0.31
COL12A1-201ENST00000322507 TRIM52Q96A61 297 aa13.12□□□□□ -0.31
COL12A1-201ENST00000322507 CANXP27824 592 aaKnown RBP13.1□□□□□ -0.31
COL12A1-201ENST00000322507 LOC105371045A0A1W2PR82 267 aa13.06□□□□□ -0.32
COL12A1-201ENST00000322507 BCL11AQ9H165 835 aa13.05□□□□□ -0.32
COL12A1-201ENST00000322507 UPF2Q9HAU5 1272 aaKnown RBP13.05□□□□□ -0.32
COL12A1-201ENST00000322507 HSP90AA1P07900 732 aaKnown RBP12.99□□□□□ -0.33
COL12A1-201ENST00000322507 DCAF1Q9Y4B6 1507 aa12.98□□□□□ -0.33
COL12A1-201ENST00000322507 NEUROD1Q13562 356 aa12.95□□□□□ -0.34
COL12A1-201ENST00000322507 NAP1L5Q96NT1 182 aaPredicted RBP12.95□□□□□ -0.34
COL12A1-201ENST00000322507 TNNT3P45378 269 aaPredicted RBP12.93□□□□□ -0.34
COL12A1-201ENST00000322507 CNGB1Q14028 1251 aaPredicted RBP12.92□□□□□ -0.34
COL12A1-201ENST00000322507 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.91□□□□□ -0.34
COL12A1-201ENST00000322507 TONSLQ96HA7 1378 aa12.9□□□□□ -0.34
COL12A1-201ENST00000322507 ABCC9O60706 1549 aa12.87□□□□□ -0.35
COL12A1-201ENST00000322507 GOLGA6L22H0YM25 854 aa12.87□□□□□ -0.35
COL12A1-201ENST00000322507 NBR1Q14596 966 aa12.86□□□□□ -0.35
COL12A1-201ENST00000322507 DDRGK1Q96HY6 314 aa12.84□□□□□ -0.35
COL12A1-201ENST00000322507 CHAF1AQ13111 956 aaPredicted RBP12.84□□□□□ -0.35
COL12A1-201ENST00000322507 BCANQ96GW7 911 aa12.84□□□□□ -0.35
COL12A1-201ENST00000322507 CSRNP3Q8WYN3 585 aa12.83□□□□□ -0.36
COL12A1-201ENST00000322507 A0A0U1RQG5 324 aaPredicted RBP12.82□□□□□ -0.36
COL12A1-201ENST00000322507 ESF1Q9H501 851 aaKnown RBP12.82□□□□□ -0.36
COL12A1-201ENST00000322507 SCRIBQ14160 1630 aa12.8□□□□□ -0.36
COL12A1-201ENST00000322507 HMGB1P09429 215 aaKnown RBP12.8□□□□□ -0.36
COL12A1-201ENST00000322507 LAS1LQ9Y4W2 734 aaKnown RBP12.79□□□□□ -0.36
COL12A1-201ENST00000322507 APPP05067 770 aa12.79□□□□□ -0.36
COL12A1-201ENST00000322507 EEA1Q15075 1411 aa12.79□□□□□ -0.36
COL12A1-201ENST00000322507 SETQ01105 290 aaPredicted RBP12.78□□□□□ -0.36
COL12A1-201ENST00000322507 DNTTIP2Q5QJE6 756 aaKnown RBP12.78□□□□□ -0.36
COL12A1-201ENST00000322507 NPM2Q86SE8 214 aaKnown RBP12.78□□□□□ -0.36
COL12A1-201ENST00000322507 ZCCHC6Q5VYS8 1495 aaKnown RBP12.77□□□□□ -0.36
COL12A1-201ENST00000322507 PNNQ9H307 717 aaKnown RBP12.77□□□□□ -0.37
COL12A1-201ENST00000322507 BECN1Q14457 450 aa12.76□□□□□ -0.37
COL12A1-201ENST00000322507 GOLGA6L6A8MZA4 724 aa12.75□□□□□ -0.37
COL12A1-201ENST00000322507 MYH16Q9H6N6 1097 aa12.74□□□□□ -0.37
COL12A1-201ENST00000322507 AMER1Q5JTC6 1135 aaPredicted RBP12.74□□□□□ -0.37
COL12A1-201ENST00000322507 PODXL2Q9NZ53 605 aa12.74□□□□□ -0.37
COL12A1-201ENST00000322507 PTMAP06454 111 aaKnown RBP12.73□□□□□ -0.37
COL12A1-201ENST00000322507 USP35Q9P2H5 1018 aa12.73□□□□□ -0.37
COL12A1-201ENST00000322507 ARID4BQ4LE39 1312 aaPredicted RBP12.71□□□□□ -0.37
COL12A1-201ENST00000322507 RB1CC1Q8TDY2 1594 aa12.71□□□□□ -0.37
COL12A1-201ENST00000322507 L1TD1Q5T7N2 865 aaKnown RBP12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms