Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RNFT1P3-201ENST00000340898 1052 ntBASIC5.58□□□□□ -1.52
SOX3P41225 ZCCHC6-203ENST00000375948 958 ntTSL 2 BASIC5.58□□□□□ -1.52
SOX3P41225 SUGT1P2-201ENST00000379452 992 ntBASIC5.58□□□□□ -1.52
SOX3P41225 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
SOX3P41225 ZNF736P10Y-201ENST00000403990 1110 ntBASIC5.58□□□□□ -1.52
SOX3P41225 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SOX3P41225 AL731534.1-201ENST00000434711 269 ntBASIC5.58□□□□□ -1.52
SOX3P41225 RPS3AP38-201ENST00000435889 763 ntBASIC5.58□□□□□ -1.52
SOX3P41225 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC5.58□□□□□ -1.52
SOX3P41225 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC5.58□□□□□ -1.52
SOX3P41225 HLA-DPA3-207ENST00000454398 229 ntBASIC5.58□□□□□ -1.52
SOX3P41225 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC5.58□□□□□ -1.52
SOX3P41225 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC5.58□□□□□ -1.52
SOX3P41225 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC5.58□□□□□ -1.52
SOX3P41225 AC006499.4-201ENST00000510947 694 ntBASIC5.58□□□□□ -1.52
SOX3P41225 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC5.58□□□□□ -1.52
SOX3P41225 CETN3-206ENST00000522864 738 ntTSL 3 BASIC5.58□□□□□ -1.52
SOX3P41225 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.58□□□□□ -1.52
SOX3P41225 OR56A7P-201ENST00000524865 941 ntBASIC5.58□□□□□ -1.52
SOX3P41225 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC5.58□□□□□ -1.52
SOX3P41225 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SOX3P41225 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC5.58□□□□□ -1.52
SOX3P41225 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC5.58□□□□□ -1.52
SOX3P41225 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC5.58□□□□□ -1.52
SOX3P41225 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC5.58□□□□□ -1.52
SOX3P41225 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC5.58□□□□□ -1.52
SOX3P41225 AC090236.2-201ENST00000587933 1101 ntBASIC5.58□□□□□ -1.52
SOX3P41225 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC5.58□□□□□ -1.52
SOX3P41225 AC108865.2-201ENST00000606881 432 ntBASIC5.58□□□□□ -1.52
SOX3P41225 AC015982.1-201ENST00000608113 465 ntBASIC5.58□□□□□ -1.52
SOX3P41225 AL096712.1-201ENST00000614561 159 ntBASIC5.58□□□□□ -1.52
SOX3P41225 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC5.58□□□□□ -1.52
SOX3P41225 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC5.58□□□□□ -1.52
SOX3P41225 AL136228.1-201ENST00000622221 319 ntBASIC5.58□□□□□ -1.52
SOX3P41225 FO681491.1-202ENST00000623392 737 ntBASIC5.58□□□□□ -1.52
SOX3P41225 AC129778.1-202ENST00000623812 261 ntBASIC5.58□□□□□ -1.52
SOX3P41225 AL357562.1-201ENST00000624911 609 ntBASIC5.58□□□□□ -1.52
SOX3P41225 AL591379.1-207ENST00000635982 261 ntBASIC5.58□□□□□ -1.52
SOX3P41225 AMYH02020865.1-205ENST00000636189 261 ntBASIC5.58□□□□□ -1.52
SOX3P41225 RFC1-217ENST00000639695 867 ntTSL 5 BASIC5.58□□□□□ -1.52
SOX3P41225 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
SOX3P41225 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
SOX3P41225 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SOX3P41225 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SOX3P41225 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
SOX3P41225 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SOX3P41225 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
SOX3P41225 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SOX3P41225 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
SOX3P41225 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
SOX3P41225 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.58□□□□□ -1.52
SOX3P41225 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
SOX3P41225 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
SOX3P41225 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
SOX3P41225 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
SOX3P41225 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC5.57□□□□□ -1.52
SOX3P41225 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
SOX3P41225 CR383656.5-201ENST00000547616 1340 ntBASIC5.57□□□□□ -1.52
SOX3P41225 SAMMSON-210ENST00000641260 1308 ntBASIC5.57□□□□□ -1.52
SOX3P41225 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SOX3P41225 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SOX3P41225 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SOX3P41225 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SOX3P41225 CLEC2D-202ENST00000261340 935 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
SOX3P41225 RNA5SP477-201ENST00000362639 119 ntBASIC5.57□□□□□ -1.52
SOX3P41225 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.57□□□□□ -1.52
SOX3P41225 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC5.57□□□□□ -1.52
SOX3P41225 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SOX3P41225 AL445466.1-201ENST00000448432 357 ntBASIC5.57□□□□□ -1.52
SOX3P41225 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC5.57□□□□□ -1.52
SOX3P41225 RPL12P24-201ENST00000474907 486 ntBASIC5.57□□□□□ -1.52
SOX3P41225 AC092865.4-201ENST00000477936 615 ntBASIC5.57□□□□□ -1.52
SOX3P41225 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SOX3P41225 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC5.57□□□□□ -1.52
SOX3P41225 AC060775.1-201ENST00000518241 520 ntBASIC5.57□□□□□ -1.52
SOX3P41225 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC5.57□□□□□ -1.52
SOX3P41225 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
SOX3P41225 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC5.57□□□□□ -1.52
SOX3P41225 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC5.57□□□□□ -1.52
SOX3P41225 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC5.57□□□□□ -1.52
SOX3P41225 MIR4310-201ENST00000582950 57 ntBASIC5.57□□□□□ -1.52
SOX3P41225 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SOX3P41225 AP001962.1-201ENST00000624114 559 ntBASIC5.57□□□□□ -1.52
SOX3P41225 MVP-219ENST00000629059 120 ntTSL 5 BASIC5.57□□□□□ -1.52
SOX3P41225 MAPK10-350ENST00000641777 965 ntBASIC5.57□□□□□ -1.52
SOX3P41225 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SOX3P41225 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SOX3P41225 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.57□□□□□ -1.52
SOX3P41225 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SOX3P41225 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SOX3P41225 OR7A10-202ENST00000641129 1847 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
SOX3P41225 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
SOX3P41225 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SOX3P41225 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.57□□□□□ -1.52
SOX3P41225 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SOX3P41225 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SOX3P41225 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SOX3P41225 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SOX3P41225 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SOX3P41225 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 117.7 ms