RNA–Protein interactions for RNA: ENST00000639695.1

RFC1-217, Transcript of replication factor C subunit 1, humanhuman

TSL 5 BASIC

Gene RFC1, Length 867 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-217ENST00000639695 AEBP2Q6ZN18 517 aaPredicted RBP35.17■■■■□ 3.22
RFC1-217ENST00000639695 CHIC1Q5VXU3 224 aa33.23■■■□□ 2.91
RFC1-217ENST00000639695 SENP3Q9H4L4 574 aaPredicted RBP29.8■■■□□ 2.36
RFC1-217ENST00000639695 PHF23Q9BUL5 403 aaPredicted RBP29.5■■■□□ 2.31
RFC1-217ENST00000639695 FOXD1Q16676 465 aa27.92■■■□□ 2.06
RFC1-217ENST00000639695 PLPPR3Q6T4P5 718 aa26.45■■□□□ 1.82
RFC1-217ENST00000639695 PPP6R1Q9UPN7 881 aa26.14■■□□□ 1.78
RFC1-217ENST00000639695 ADRA2BP18089 450 aa26.02■■□□□ 1.76
RFC1-217ENST00000639695 PIAS4Q8N2W9 510 aaPredicted RBP26.01■■□□□ 1.75
RFC1-217ENST00000639695 MSH5O43196 834 aa25.98■■□□□ 1.75
RFC1-217ENST00000639695 POTEDQ86YR6 584 aa25.59■■□□□ 1.69
RFC1-217ENST00000639695 MAPK8IP2Q13387 824 aaPredicted RBP23.95■■□□□ 1.42
RFC1-217ENST00000639695 DMRT2Q9Y5R5 561 aa23.68■■□□□ 1.38
RFC1-217ENST00000639695 SCAF1Q9H7N4 1312 aaKnown RBP23.58■■□□□ 1.36
RFC1-217ENST00000639695 PPP4R3CPQ6ZMV5 832 aa23.25■■□□□ 1.31
RFC1-217ENST00000639695 HOXD11P31277 338 aaPredicted RBP22.79■■□□□ 1.24
RFC1-217ENST00000639695 CNKSR2Q8WXI2 1034 aa22.76■■□□□ 1.23
RFC1-217ENST00000639695 DCAF8L1A6NGE4 600 aa22.7■■□□□ 1.22
RFC1-217ENST00000639695 RNF216Q9NWF9 866 aaPredicted RBP22.57■■□□□ 1.2
RFC1-217ENST00000639695 CACNB1Q02641 598 aaPredicted RBP22.38■■□□□ 1.17
RFC1-217ENST00000639695 RNF39Q9H2S5 420 aa22.26■■□□□ 1.15
RFC1-217ENST00000639695 NCBP3Q53F19 620 aaKnown RBP22.21■■□□□ 1.15
RFC1-217ENST00000639695 NPM3O75607 178 aaKnown RBP22.05■■□□□ 1.12
RFC1-217ENST00000639695 DNAJC5BQ9UF47 199 aa21.9■■□□□ 1.1
RFC1-217ENST00000639695 C1QBPQ07021 282 aaKnown RBP21.84■■□□□ 1.09
RFC1-217ENST00000639695 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.68■■□□□ 1.064e-7■■■□□ 17.4
RFC1-217ENST00000639695 KCNA4P22459 653 aa21.63■■□□□ 1.05
RFC1-217ENST00000639695 U3KPZ7 1027 aaPredicted RBP21.31■■□□□ 1
RFC1-217ENST00000639695 SLC4A2P04920 1241 aa21.12■□□□□ 0.97
RFC1-217ENST00000639695 SPINK5Q9NQ38 1064 aaPredicted RBP21.05■□□□□ 0.96
RFC1-217ENST00000639695 CAPN15O75808 1086 aa20.91■□□□□ 0.94
RFC1-217ENST00000639695 DSG3P32926 999 aa20.85■□□□□ 0.93
RFC1-217ENST00000639695 TRHP20396 242 aaPredicted RBP20.59■□□□□ 0.89
RFC1-217ENST00000639695 ABCB7O75027 752 aa20.51■□□□□ 0.87
RFC1-217ENST00000639695 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.47■□□□□ 0.87
RFC1-217ENST00000639695 HNRNPUL2Q1KMD3 747 aaKnown RBP20.47■□□□□ 0.87
RFC1-217ENST00000639695 APLP2Q06481 763 aa20.45■□□□□ 0.86
RFC1-217ENST00000639695 ZNF219Q9P2Y4 722 aaPredicted RBP20.45■□□□□ 0.86
RFC1-217ENST00000639695 SAMD1Q6SPF0 538 aaPredicted RBP20.41■□□□□ 0.86
RFC1-217ENST00000639695 SLC4A1APQ9BWU0 796 aaKnown RBP20.32■□□□□ 0.84
RFC1-217ENST00000639695 MYCNP04198 464 aaPredicted RBP20.3■□□□□ 0.84
RFC1-217ENST00000639695 FOXD4L1Q9NU39 408 aa20.09■□□□□ 0.81
RFC1-217ENST00000639695 POLA2Q14181 598 aa20.03■□□□□ 0.8
RFC1-217ENST00000639695 ATF5Q9Y2D1 282 aaPredicted RBP20.03■□□□□ 0.8
RFC1-217ENST00000639695 POTEHQ6S545 545 aa20■□□□□ 0.79
RFC1-217ENST00000639695 ZBTB22O15209 634 aa19.96■□□□□ 0.79
RFC1-217ENST00000639695 RBM42Q9BTD8 480 aaKnown RBP19.74■□□□□ 0.75
RFC1-217ENST00000639695 ZBTB12Q9Y330 459 aaPredicted RBP19.47■□□□□ 0.71
RFC1-217ENST00000639695 CHRDL2Q6WN34 429 aa19.44■□□□□ 0.7
RFC1-217ENST00000639695 OSCARQ8IYS5 282 aa19.44■□□□□ 0.7
RFC1-217ENST00000639695 ATXN8OSP0DMR3 200 aa19.41■□□□□ 0.7
RFC1-217ENST00000639695 AKT1S1Q96B36 256 aa19.34■□□□□ 0.69
RFC1-217ENST00000639695 REM2Q8IYK8 340 aaPredicted RBP19.23■□□□□ 0.67
RFC1-217ENST00000639695 MKRN4PQ13434 485 aaPredicted RBP19.07■□□□□ 0.64
RFC1-217ENST00000639695 PITPNM1O00562 1244 aa19.05■□□□□ 0.64
RFC1-217ENST00000639695 FBLN2P98095 1184 aa19.02■□□□□ 0.64
RFC1-217ENST00000639695 PIP4P2Q8N4L2 257 aa19.01■□□□□ 0.63
RFC1-217ENST00000639695 SPDYE2BA6NHP3 402 aa18.94■□□□□ 0.62
RFC1-217ENST00000639695 SPDYE6P0CI01 402 aa18.94■□□□□ 0.62
RFC1-217ENST00000639695 SPDYE2Q495Y8 402 aa18.94■□□□□ 0.62
RFC1-217ENST00000639695 CSRNP3Q8WYN3 585 aa18.93■□□□□ 0.62
RFC1-217ENST00000639695 FXR2P51116 673 aaKnown RBP eCLIP18.87■□□□□ 0.617e-6■■■■□ 19.6
RFC1-217ENST00000639695 SSUH2Q9Y2M2 353 aa18.75■□□□□ 0.59
RFC1-217ENST00000639695 ZNF692Q9BU19 519 aaPredicted RBP18.73■□□□□ 0.59
RFC1-217ENST00000639695 SP7Q8TDD2 431 aaPredicted RBP18.71■□□□□ 0.59
RFC1-217ENST00000639695 EHMT2Q96KQ7 1210 aa18.65■□□□□ 0.58
RFC1-217ENST00000639695 CLEC11AQ9Y240 323 aa18.64■□□□□ 0.57
RFC1-217ENST00000639695 HAX1O00165 279 aa18.62■□□□□ 0.57
RFC1-217ENST00000639695 SPDYE1Q8NFV5 336 aaPredicted RBP18.6■□□□□ 0.57
RFC1-217ENST00000639695 EVX2Q03828 476 aa18.55■□□□□ 0.56
RFC1-217ENST00000639695 PRKAR2AP13861 404 aaKnown RBP18.52■□□□□ 0.56
RFC1-217ENST00000639695 PABPN1Q86U42 306 aaKnown RBP eCLIP18.49■□□□□ 0.55
RFC1-217ENST00000639695 CHADLQ6NUI6 762 aa18.38■□□□□ 0.53
RFC1-217ENST00000639695 PRR29P0C7W0 189 aa18.29■□□□□ 0.52
RFC1-217ENST00000639695 C19orf67A6NJJ6 358 aa18.26■□□□□ 0.51
RFC1-217ENST00000639695 SPDYE4A6NLX3 237 aa18.04■□□□□ 0.48
RFC1-217ENST00000639695 GABBR2O75899 941 aa18.02■□□□□ 0.48
RFC1-217ENST00000639695 FARP1Q9Y4F1 1045 aaPredicted RBP18.02■□□□□ 0.48
RFC1-217ENST00000639695 CD44P16070 742 aaKnown RBP17.92■□□□□ 0.46
RFC1-217ENST00000639695 CREBZFQ9NS37 354 aa17.92■□□□□ 0.46
RFC1-217ENST00000639695 STAG3Q9UJ98 1225 aa17.84■□□□□ 0.45
RFC1-217ENST00000639695 POTEIP0CG38 1075 aa17.72■□□□□ 0.43
RFC1-217ENST00000639695 ZRANB1Q9UGI0 708 aa17.67■□□□□ 0.42
RFC1-217ENST00000639695 PROM2Q8N271 834 aa17.64■□□□□ 0.41
RFC1-217ENST00000639695 ZNF579Q8NAF0 562 aaKnown RBP17.64■□□□□ 0.41
RFC1-217ENST00000639695 MNX1P50219 401 aaPredicted RBP17.63■□□□□ 0.41
RFC1-217ENST00000639695 LHX8Q68G74 356 aa17.55■□□□□ 0.4
RFC1-217ENST00000639695 GALR2O43603 387 aaPredicted RBP17.5■□□□□ 0.39
RFC1-217ENST00000639695 CLCN6P51797 869 aa17.5■□□□□ 0.39
RFC1-217ENST00000639695 PHF12Q96QT6 1004 aa17.49■□□□□ 0.39
RFC1-217ENST00000639695 DCBLD2Q96PD2 775 aa17.44■□□□□ 0.38
RFC1-217ENST00000639695 NPM1P06748 294 aaKnown RBP eCLIP17.43■□□□□ 0.38
RFC1-217ENST00000639695 PAK3O75914 559 aaPredicted RBP17.38■□□□□ 0.37
RFC1-217ENST00000639695 TSPYL2Q9H2G4 693 aaPredicted RBP17.24■□□□□ 0.35
RFC1-217ENST00000639695 MS4A3Q96HJ5 214 aa17.23■□□□□ 0.35
RFC1-217ENST00000639695 PELP1Q8IZL8 1130 aaKnown RBP17.21■□□□□ 0.35
RFC1-217ENST00000639695 MIER1Q8N108 512 aa17.18■□□□□ 0.34
RFC1-217ENST00000639695 CCDC61Q9Y6R9 512 aa17.18■□□□□ 0.34
RFC1-217ENST00000639695 POTEB2H3BUK9 544 aa17.15■□□□□ 0.34
RFC1-217ENST00000639695 FKBP8Q14318 412 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms