Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC6.89□□□□□ -1.31
BRCA1P38398 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC6.89□□□□□ -1.31
BRCA1P38398 RAB9BP1-201ENST00000519581 626 ntBASIC6.89□□□□□ -1.31
BRCA1P38398 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC6.89□□□□□ -1.31
BRCA1P38398 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC6.89□□□□□ -1.31
BRCA1P38398 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC6.89□□□□□ -1.31
BRCA1P38398 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
BRCA1P38398 EYA3-208ENST00000540618 5885 ntTSL 2 BASIC6.89□□□□□ -1.31
BRCA1P38398 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC6.89□□□□□ -1.31
BRCA1P38398 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
BRCA1P38398 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
BRCA1P38398 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
BRCA1P38398 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
BRCA1P38398 SGMS2-202ENST00000394684 6149 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
BRCA1P38398 CNOT7-201ENST00000361272 6913 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
BRCA1P38398 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC6.88□□□□□ -1.31
BRCA1P38398 ZNF229-204ENST00000614049 4507 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
BRCA1P38398 AC112243.1-201ENST00000623949 3851 ntBASIC6.88□□□□□ -1.31
BRCA1P38398 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC6.88□□□□□ -1.31
BRCA1P38398 AC232271.1-201ENST00000602455 2715 ntBASIC6.88□□□□□ -1.31
BRCA1P38398 RN7SKP95-201ENST00000362860 303 ntBASIC6.88□□□□□ -1.31
BRCA1P38398 SNORA67-201ENST00000384423 137 ntBASIC6.88□□□□□ -1.31
BRCA1P38398 MIR192-201ENST00000384915 110 ntBASIC6.88□□□□□ -1.31
BRCA1P38398 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC6.88□□□□□ -1.31
BRCA1P38398 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC6.88□□□□□ -1.31
BRCA1P38398 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC6.88□□□□□ -1.31
BRCA1P38398 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
BRCA1P38398 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC6.88□□□□□ -1.31
BRCA1P38398 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC6.88□□□□□ -1.31
BRCA1P38398 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
BRCA1P38398 CASC19-281ENST00000642118 1554 ntBASIC6.88□□□□□ -1.31
BRCA1P38398 AC127070.3-201ENST00000503695 3263 ntBASIC6.88□□□□□ -1.31
BRCA1P38398 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
BRCA1P38398 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC6.88□□□□□ -1.31
BRCA1P38398 LRRC28-201ENST00000301981 5971 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
BRCA1P38398 CHRM3-201ENST00000255380 8780 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
BRCA1P38398 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
BRCA1P38398 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
BRCA1P38398 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
BRCA1P38398 OR56B1-201ENST00000317121 2075 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
BRCA1P38398 AC011493.1-201ENST00000596753 1632 ntBASIC6.88□□□□□ -1.31
BRCA1P38398 CCDC73-203ENST00000531481 4381 ntAPPRIS ALT2 TSL 2 BASIC6.88□□□□□ -1.31
BRCA1P38398 CASR-205ENST00000639785 10047 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
BRCA1P38398 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
BRCA1P38398 DNAJA1P4-201ENST00000406473 1166 ntBASIC6.87□□□□□ -1.31
BRCA1P38398 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC6.87□□□□□ -1.31
BRCA1P38398 TEX41-205ENST00000431734 529 ntTSL 4 BASIC6.87□□□□□ -1.31
BRCA1P38398 NDUFAF4P3-201ENST00000456468 525 ntBASIC6.87□□□□□ -1.31
BRCA1P38398 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC6.87□□□□□ -1.31
BRCA1P38398 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC6.87□□□□□ -1.31
BRCA1P38398 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC6.87□□□□□ -1.31
BRCA1P38398 IGLV3-24-201ENST00000517477 197 ntBASIC6.87□□□□□ -1.31
BRCA1P38398 AC139697.1-201ENST00000548429 745 ntBASIC6.87□□□□□ -1.31
BRCA1P38398 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC6.87□□□□□ -1.31
BRCA1P38398 MIR3934-201ENST00000579806 107 ntBASIC6.87□□□□□ -1.31
BRCA1P38398 VANGL1-204ENST00000369510 8647 ntAPPRIS ALT1 TSL 1 (best) BASIC6.87□□□□□ -1.31
BRCA1P38398 ECT2-206ENST00000417960 4363 ntAPPRIS ALT1 TSL 1 (best) BASIC6.87□□□□□ -1.31
BRCA1P38398 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC6.87□□□□□ -1.31
BRCA1P38398 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
BRCA1P38398 LNPK-201ENST00000272748 7610 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
BRCA1P38398 EPS15P1-202ENST00000459691 2071 ntBASIC6.87□□□□□ -1.31
BRCA1P38398 AL662795.2-201ENST00000624252 3706 ntBASIC6.87□□□□□ -1.31
BRCA1P38398 PRICKLE2-201ENST00000295902 7918 ntAPPRIS ALT2 TSL 5 BASIC6.87□□□□□ -1.31
BRCA1P38398 COL24A1-201ENST00000370571 6825 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
BRCA1P38398 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
BRCA1P38398 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC6.87□□□□□ -1.31
BRCA1P38398 VWA5A-205ENST00000456829 4388 ntAPPRIS P4 TSL 1 (best) BASIC6.87□□□□□ -1.31
BRCA1P38398 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC6.87□□□□□ -1.31
BRCA1P38398 AC068538.1-201ENST00000376856 336 ntBASIC6.87□□□□□ -1.31
BRCA1P38398 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC6.87□□□□□ -1.31
BRCA1P38398 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
BRCA1P38398 OR4K12P-201ENST00000406538 961 ntBASIC6.87□□□□□ -1.31
BRCA1P38398 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC6.87□□□□□ -1.31
BRCA1P38398 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
BRCA1P38398 AL035690.1-201ENST00000490892 383 ntBASIC6.87□□□□□ -1.31
BRCA1P38398 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC6.87□□□□□ -1.31
BRCA1P38398 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC6.87□□□□□ -1.31
BRCA1P38398 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC6.87□□□□□ -1.31
BRCA1P38398 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC6.87□□□□□ -1.31
BRCA1P38398 UBE2Q2P10-201ENST00000514854 900 ntBASIC6.87□□□□□ -1.31
BRCA1P38398 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC6.87□□□□□ -1.31
BRCA1P38398 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC6.87□□□□□ -1.31
BRCA1P38398 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC6.87□□□□□ -1.31
BRCA1P38398 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC6.87□□□□□ -1.31
BRCA1P38398 AC091905.4-201ENST00000623432 202 ntBASIC6.87□□□□□ -1.31
BRCA1P38398 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC6.87□□□□□ -1.31
BRCA1P38398 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
BRCA1P38398 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC6.87□□□□□ -1.31
BRCA1P38398 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC6.87□□□□□ -1.31
BRCA1P38398 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC6.87□□□□□ -1.31
BRCA1P38398 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
BRCA1P38398 HMGB1-203ENST00000341423 5485 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
BRCA1P38398 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC6.86□□□□□ -1.31
BRCA1P38398 DCAF5-205ENST00000554215 4803 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
BRCA1P38398 CARD8-202ENST00000391898 5263 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
BRCA1P38398 CTNND1-220ENST00000529526 6099 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
BRCA1P38398 TNPO1-201ENST00000337273 11183 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
BRCA1P38398 PSD3-220ENST00000615573 5843 ntTSL 5 BASIC6.86□□□□□ -1.31
BRCA1P38398 OR2J2-203ENST00000641417 2392 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
BRCA1P38398 LYRM4-201ENST00000330636 7312 ntAPPRIS P3 TSL 1 (best) BASIC6.86□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms