Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC6.75□□□□□ -1.33
COL4A5P29400 AP004607.2-201ENST00000533949 322 ntBASIC6.75□□□□□ -1.33
COL4A5P29400 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC6.75□□□□□ -1.33
COL4A5P29400 IGLCOR22-2-201ENST00000605398 313 ntBASIC6.75□□□□□ -1.33
COL4A5P29400 ZNF385B-201ENST00000336917 2610 ntTSL 5 BASIC6.75□□□□□ -1.33
COL4A5P29400 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL4A5P29400 MTMR7-201ENST00000180173 3850 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL4A5P29400 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC6.75□□□□□ -1.33
COL4A5P29400 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC6.75□□□□□ -1.33
COL4A5P29400 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC6.75□□□□□ -1.33
COL4A5P29400 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
COL4A5P29400 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL4A5P29400 GABRB3-216ENST00000628124 5581 ntTSL 2 BASIC6.75□□□□□ -1.33
COL4A5P29400 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC6.75□□□□□ -1.33
COL4A5P29400 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL4A5P29400 GON4L-201ENST00000271883 7138 ntAPPRIS P3 TSL 5 BASIC6.75□□□□□ -1.33
COL4A5P29400 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL4A5P29400 CDC123-202ENST00000378900 933 ntTSL 5 BASIC6.74□□□□□ -1.33
COL4A5P29400 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL4A5P29400 TMA16P2-201ENST00000413187 601 ntBASIC6.74□□□□□ -1.33
COL4A5P29400 HNRNPA3P4-201ENST00000427514 803 ntBASIC6.74□□□□□ -1.33
COL4A5P29400 AL772161.1-201ENST00000439130 476 ntBASIC6.74□□□□□ -1.33
COL4A5P29400 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC6.74□□□□□ -1.33
COL4A5P29400 AC105399.1-202ENST00000447303 205 ntBASIC6.74□□□□□ -1.33
COL4A5P29400 RPS29P33-201ENST00000456717 146 ntBASIC6.74□□□□□ -1.33
COL4A5P29400 RPS29P22-201ENST00000472363 168 ntBASIC6.74□□□□□ -1.33
COL4A5P29400 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC6.74□□□□□ -1.33
COL4A5P29400 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC6.74□□□□□ -1.33
COL4A5P29400 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC6.74□□□□□ -1.33
COL4A5P29400 AC139697.1-201ENST00000548429 745 ntBASIC6.74□□□□□ -1.33
COL4A5P29400 AL022394.1-201ENST00000606979 292 ntBASIC6.74□□□□□ -1.33
COL4A5P29400 AC009163.6-201ENST00000612367 342 ntBASIC6.74□□□□□ -1.33
COL4A5P29400 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC6.74□□□□□ -1.33
COL4A5P29400 UTY-213ENST00000612274 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL4A5P29400 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL4A5P29400 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL4A5P29400 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL4A5P29400 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL4A5P29400 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL4A5P29400 VWA3A-202ENST00000389398 4600 ntAPPRIS P2 TSL 5 BASIC6.74□□□□□ -1.33
COL4A5P29400 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL4A5P29400 DSCAM-203ENST00000617870 6176 ntTSL 5 BASIC6.74□□□□□ -1.33
COL4A5P29400 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL4A5P29400 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC6.74□□□□□ -1.33
COL4A5P29400 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL4A5P29400 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL4A5P29400 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC6.74□□□□□ -1.33
COL4A5P29400 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL4A5P29400 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL4A5P29400 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL4A5P29400 AC009831.5-201ENST00000624000 3189 ntBASIC6.74□□□□□ -1.33
COL4A5P29400 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL4A5P29400 RNU1-149P-201ENST00000390870 161 ntBASIC6.74□□□□□ -1.33
COL4A5P29400 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL4A5P29400 AL133388.1-201ENST00000404509 287 ntBASIC6.74□□□□□ -1.33
COL4A5P29400 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC6.74□□□□□ -1.33
COL4A5P29400 AC104837.2-201ENST00000427236 424 ntBASIC6.74□□□□□ -1.33
COL4A5P29400 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC6.74□□□□□ -1.33
COL4A5P29400 GYG1P1-201ENST00000460864 698 ntBASIC6.74□□□□□ -1.33
COL4A5P29400 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC6.74□□□□□ -1.33
COL4A5P29400 AL049779.3-201ENST00000557141 606 ntBASIC6.74□□□□□ -1.33
COL4A5P29400 AC079075.1-201ENST00000559543 878 ntBASIC6.74□□□□□ -1.33
COL4A5P29400 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC6.74□□□□□ -1.33
COL4A5P29400 AC005224.3-201ENST00000584683 2140 ntBASIC6.74□□□□□ -1.33
COL4A5P29400 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC6.74□□□□□ -1.33
COL4A5P29400 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL4A5P29400 DST-207ENST00000421834 18030 ntAPPRIS ALT2 TSL 5 BASIC6.74□□□□□ -1.33
COL4A5P29400 KIDINS220-206ENST00000473731 7248 ntTSL 5 BASIC6.74□□□□□ -1.33
COL4A5P29400 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL4A5P29400 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC6.73□□□□□ -1.33
COL4A5P29400 TRPM8-201ENST00000324695 5621 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL4A5P29400 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC6.73□□□□□ -1.33
COL4A5P29400 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL4A5P29400 LRRC37A9P-201ENST00000603850 5376 ntBASIC6.73□□□□□ -1.33
COL4A5P29400 COL21A1-203ENST00000370819 4094 ntAPPRIS ALT1 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL4A5P29400 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
COL4A5P29400 CAPS2-205ENST00000409445 2135 ntTSL 2 BASIC6.73□□□□□ -1.33
COL4A5P29400 GGCX-201ENST00000233838 7569 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL4A5P29400 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC6.73□□□□□ -1.33
COL4A5P29400 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL4A5P29400 CDH8-203ENST00000577390 9721 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL4A5P29400 RNU4-2-201ENST00000365668 141 ntBASIC6.73□□□□□ -1.33
COL4A5P29400 MRRF-207ENST00000373729 870 ntTSL 3 BASIC6.73□□□□□ -1.33
COL4A5P29400 MID1-205ENST00000380785 6092 ntAPPRIS P1 TSL 2 BASIC6.73□□□□□ -1.33
COL4A5P29400 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL4A5P29400 RNA5SP87-201ENST00000384155 118 ntBASIC6.73□□□□□ -1.33
COL4A5P29400 SNORA67-201ENST00000384423 137 ntBASIC6.73□□□□□ -1.33
COL4A5P29400 SRSF1P1-201ENST00000424058 520 ntBASIC6.73□□□□□ -1.33
COL4A5P29400 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC6.73□□□□□ -1.33
COL4A5P29400 AL049745.1-201ENST00000433953 286 ntBASIC6.73□□□□□ -1.33
COL4A5P29400 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
COL4A5P29400 AL671862.1-201ENST00000515851 349 ntBASIC6.73□□□□□ -1.33
COL4A5P29400 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC6.73□□□□□ -1.33
COL4A5P29400 AC090607.5-201ENST00000615692 224 ntBASIC6.73□□□□□ -1.33
COL4A5P29400 AL731566.2-201ENST00000618971 317 ntBASIC6.73□□□□□ -1.33
COL4A5P29400 AC104581.5-201ENST00000624171 7141 ntBASIC6.73□□□□□ -1.33
COL4A5P29400 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC6.73□□□□□ -1.33
COL4A5P29400 CASC22-202ENST00000628396 802 ntTSL 5 BASIC6.73□□□□□ -1.33
COL4A5P29400 AL162456.1-201ENST00000634535 2006 ntBASIC6.73□□□□□ -1.33
COL4A5P29400 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC6.73□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms