Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC093765.1-201ENST00000603758 881 ntBASIC5.72□□□□□ -1.49
COL6A3P12111 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
COL6A3P12111 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL6A3P12111 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL6A3P12111 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL6A3P12111 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.72□□□□□ -1.49
COL6A3P12111 GCN1-201ENST00000300648 8675 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL6A3P12111 ARID1A-202ENST00000374152 6460 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
COL6A3P12111 SVIL-203ENST00000375400 6729 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL6A3P12111 GRB10-204ENST00000398812 4705 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
COL6A3P12111 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.49
COL6A3P12111 FCGR1B-210ENST00000623603 1581 ntAPPRIS P2 TSL 1 (best) BASIC5.71□□□□□ -1.49
COL6A3P12111 EPPK1-202ENST00000615648 16002 ntAPPRIS P2 TSL 5 BASIC5.71□□□□□ -1.49
COL6A3P12111 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
COL6A3P12111 RNU4-2-201ENST00000365668 141 ntBASIC5.71□□□□□ -1.49
COL6A3P12111 RPL5P5-201ENST00000392009 893 ntBASIC5.71□□□□□ -1.49
COL6A3P12111 AL607077.1-201ENST00000401718 499 ntBASIC5.71□□□□□ -1.49
COL6A3P12111 RAD23BP1-201ENST00000421404 1227 ntBASIC5.71□□□□□ -1.49
COL6A3P12111 RPL5P9-201ENST00000448118 886 ntBASIC5.71□□□□□ -1.49
COL6A3P12111 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC5.71□□□□□ -1.49
COL6A3P12111 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC5.71□□□□□ -1.49
COL6A3P12111 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC5.71□□□□□ -1.49
COL6A3P12111 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC5.71□□□□□ -1.49
COL6A3P12111 COL4A6-210ENST00000621266 6627 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
COL6A3P12111 NRP1-208ENST00000395995 5826 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
COL6A3P12111 ZNF776-201ENST00000317178 5292 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
COL6A3P12111 CYP1D1P-201ENST00000416662 1433 ntBASIC5.71□□□□□ -1.49
COL6A3P12111 LRRC37A-202ENST00000393465 4997 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.49
COL6A3P12111 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
COL6A3P12111 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC5.71□□□□□ -1.49
COL6A3P12111 KALRN-201ENST00000240874 6537 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
COL6A3P12111 KALRN-211ENST00000460856 6509 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
COL6A3P12111 BCL9-201ENST00000234739 6278 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
COL6A3P12111 MPP7-201ENST00000337532 5080 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.49
COL6A3P12111 ARPC5-202ENST00000359856 7209 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL6A3P12111 LTBP1-201ENST00000402934 4948 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
COL6A3P12111 SLC36A4-206ENST00000529184 1917 ntTSL 2 BASIC5.71□□□□□ -1.5
COL6A3P12111 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
COL6A3P12111 RNA5SP211-201ENST00000365516 117 ntBASIC5.71□□□□□ -1.5
COL6A3P12111 NIFKP3-201ENST00000417799 865 ntBASIC5.71□□□□□ -1.5
COL6A3P12111 PGM5-AS1-202ENST00000420855 572 ntTSL 3 BASIC5.71□□□□□ -1.5
COL6A3P12111 LINC02059-201ENST00000503843 452 ntTSL 3 BASIC5.71□□□□□ -1.5
COL6A3P12111 MRPS33P2-201ENST00000507850 322 ntBASIC5.71□□□□□ -1.5
COL6A3P12111 EIF3KP3-201ENST00000514461 639 ntBASIC5.71□□□□□ -1.5
COL6A3P12111 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC5.71□□□□□ -1.5
COL6A3P12111 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.71□□□□□ -1.5
COL6A3P12111 AL356218.2-201ENST00000605264 187 ntBASIC5.71□□□□□ -1.5
COL6A3P12111 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
COL6A3P12111 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL6A3P12111 GREB1L-209ENST00000580732 8749 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
COL6A3P12111 DMXL2-201ENST00000251076 10672 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL6A3P12111 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.71□□□□□ -1.5
COL6A3P12111 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL6A3P12111 PWAR1-201ENST00000624188 2414 ntBASIC5.71□□□□□ -1.5
COL6A3P12111 TNPO1P2-201ENST00000426249 2665 ntBASIC5.71□□□□□ -1.5
COL6A3P12111 THAP12P4-201ENST00000528321 2266 ntBASIC5.71□□□□□ -1.5
COL6A3P12111 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC5.71□□□□□ -1.5
COL6A3P12111 AP004607.3-201ENST00000530354 3915 ntBASIC5.71□□□□□ -1.5
COL6A3P12111 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL6A3P12111 CELF1-204ENST00000395290 7666 ntAPPRIS ALT1 TSL 2 BASIC5.71□□□□□ -1.5
COL6A3P12111 LINC00347-202ENST00000594461 2371 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL6A3P12111 CTNND1-210ENST00000524630 6553 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
COL6A3P12111 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
COL6A3P12111 RNA5SP455-201ENST00000365190 119 ntBASIC5.71□□□□□ -1.5
COL6A3P12111 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC5.71□□□□□ -1.5
COL6A3P12111 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL6A3P12111 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC5.71□□□□□ -1.5
COL6A3P12111 MIR6075-201ENST00000620782 95 ntBASIC5.71□□□□□ -1.5
COL6A3P12111 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC5.71□□□□□ -1.5
COL6A3P12111 BX284613.1-201ENST00000452221 1641 ntBASIC5.71□□□□□ -1.5
COL6A3P12111 MYO6-202ENST00000369977 5597 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL6A3P12111 MLIP-206ENST00000502396 3102 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.5
COL6A3P12111 ZNF507-201ENST00000311921 7638 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A3P12111 PCYT1A-201ENST00000292823 5597 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A3P12111 PGR-202ENST00000325455 13748 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A3P12111 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A3P12111 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC5.7□□□□□ -1.5
COL6A3P12111 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A3P12111 CUX1-201ENST00000292535 13747 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A3P12111 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A3P12111 ZFYVE26-201ENST00000347230 9675 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A3P12111 AL022100.2-201ENST00000422548 389 ntTSL 3 BASIC5.7□□□□□ -1.5
COL6A3P12111 RPL6P5-201ENST00000445678 828 ntBASIC5.7□□□□□ -1.5
COL6A3P12111 AC140172.1-201ENST00000502928 141 ntBASIC5.7□□□□□ -1.5
COL6A3P12111 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.7□□□□□ -1.5
COL6A3P12111 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC5.7□□□□□ -1.5
COL6A3P12111 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC5.7□□□□□ -1.5
COL6A3P12111 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A3P12111 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
COL6A3P12111 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
COL6A3P12111 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.7□□□□□ -1.5
COL6A3P12111 OR56B1-201ENST00000317121 2075 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
COL6A3P12111 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
COL6A3P12111 MRPS21P2-201ENST00000424704 264 ntBASIC5.7□□□□□ -1.5
COL6A3P12111 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC5.7□□□□□ -1.5
COL6A3P12111 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC5.7□□□□□ -1.5
COL6A3P12111 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC5.7□□□□□ -1.5
COL6A3P12111 RPS4XP20-201ENST00000505751 772 ntBASIC5.7□□□□□ -1.5
COL6A3P12111 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC5.7□□□□□ -1.5
COL6A3P12111 IGHVII-44-2-201ENST00000517728 250 ntBASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 135.6 ms