Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC096775.1-201ENST00000437724 448 ntBASIC6.14□□□□□ -1.43
COL4A4P53420 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC6.14□□□□□ -1.43
COL4A4P53420 AC099521.1-201ENST00000482557 334 ntBASIC6.14□□□□□ -1.43
COL4A4P53420 AC083982.1-201ENST00000485679 344 ntBASIC6.14□□□□□ -1.43
COL4A4P53420 IGLV2-34-201ENST00000490007 283 ntBASIC6.14□□□□□ -1.43
COL4A4P53420 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC6.14□□□□□ -1.43
COL4A4P53420 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC6.14□□□□□ -1.43
COL4A4P53420 RN7SKP66-201ENST00000516681 231 ntBASIC6.14□□□□□ -1.43
COL4A4P53420 GSTP1P1-201ENST00000548078 319 ntBASIC6.14□□□□□ -1.43
COL4A4P53420 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC6.14□□□□□ -1.43
COL4A4P53420 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC6.14□□□□□ -1.43
COL4A4P53420 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC6.14□□□□□ -1.43
COL4A4P53420 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC6.14□□□□□ -1.43
COL4A4P53420 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC6.14□□□□□ -1.43
COL4A4P53420 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC6.14□□□□□ -1.43
COL4A4P53420 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC6.14□□□□□ -1.43
COL4A4P53420 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL4A4P53420 CTNND1-234ENST00000532844 6012 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL4A4P53420 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL4A4P53420 API5-210ENST00000534600 1760 ntTSL 5 BASIC6.14□□□□□ -1.43
COL4A4P53420 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL4A4P53420 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL4A4P53420 CD86-204ENST00000469710 1604 ntTSL 2 BASIC6.14□□□□□ -1.43
COL4A4P53420 DLC1-201ENST00000276297 7447 ntAPPRIS P4 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL4A4P53420 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL4A4P53420 APELA-202ENST00000507152 2602 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL4A4P53420 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC6.14□□□□□ -1.43
COL4A4P53420 TMEM2-205ENST00000377066 5217 ntAPPRIS ALT1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL4A4P53420 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
COL4A4P53420 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
COL4A4P53420 COX7B2-202ENST00000396533 617 ntAPPRIS P2 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL4A4P53420 RBMY2QP-201ENST00000429799 1147 ntBASIC6.14□□□□□ -1.43
COL4A4P53420 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL4A4P53420 OR51A1P-201ENST00000511110 946 ntBASIC6.14□□□□□ -1.43
COL4A4P53420 TOMM22P4-201ENST00000511318 336 ntBASIC6.14□□□□□ -1.43
COL4A4P53420 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC6.14□□□□□ -1.43
COL4A4P53420 TPM3P3-201ENST00000521343 354 ntBASIC6.14□□□□□ -1.43
COL4A4P53420 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC6.14□□□□□ -1.43
COL4A4P53420 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC6.14□□□□□ -1.43
COL4A4P53420 PACRG-210ENST00000611387 279 ntTSL 5 BASIC6.14□□□□□ -1.43
COL4A4P53420 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC6.14□□□□□ -1.43
COL4A4P53420 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC6.14□□□□□ -1.43
COL4A4P53420 MID1-205ENST00000380785 6092 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
COL4A4P53420 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL4A4P53420 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL4A4P53420 ATP5A1P4-201ENST00000556888 1605 ntBASIC6.13□□□□□ -1.43
COL4A4P53420 LIMD1-201ENST00000273317 11331 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL4A4P53420 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL4A4P53420 CTNND1-202ENST00000361332 6295 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL4A4P53420 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL4A4P53420 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC6.13□□□□□ -1.43
COL4A4P53420 AIMP1-203ENST00000442366 2519 ntAPPRIS P3 TSL 5 BASIC6.13□□□□□ -1.43
COL4A4P53420 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL4A4P53420 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC6.13□□□□□ -1.43
COL4A4P53420 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC6.13□□□□□ -1.43
COL4A4P53420 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC6.13□□□□□ -1.43
COL4A4P53420 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL4A4P53420 TP53BP1-203ENST00000382044 10384 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL4A4P53420 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
COL4A4P53420 UTY-205ENST00000382896 6661 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL4A4P53420 UTY-211ENST00000540140 6652 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL4A4P53420 SPTAN1-222ENST00000630804 7812 ntTSL 5 BASIC6.13□□□□□ -1.43
COL4A4P53420 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC6.13□□□□□ -1.43
COL4A4P53420 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
COL4A4P53420 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
COL4A4P53420 MIR133B-201ENST00000362210 119 ntBASIC6.13□□□□□ -1.43
COL4A4P53420 AL645733.1-201ENST00000402250 217 ntBASIC6.13□□□□□ -1.43
COL4A4P53420 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL4A4P53420 VN1R54P-201ENST00000435210 1049 ntBASIC6.13□□□□□ -1.43
COL4A4P53420 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC6.13□□□□□ -1.43
COL4A4P53420 SCARNA6.1-201ENST00000516989 238 ntBASIC6.13□□□□□ -1.43
COL4A4P53420 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC6.13□□□□□ -1.43
COL4A4P53420 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC6.13□□□□□ -1.43
COL4A4P53420 AP001922.4-201ENST00000526967 290 ntBASIC6.13□□□□□ -1.43
COL4A4P53420 DCN-210ENST00000547568 823 ntTSL 3 BASIC6.13□□□□□ -1.43
COL4A4P53420 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC6.13□□□□□ -1.43
COL4A4P53420 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC6.13□□□□□ -1.43
COL4A4P53420 AC012616.1-201ENST00000600294 197 ntBASIC6.13□□□□□ -1.43
COL4A4P53420 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC6.13□□□□□ -1.43
COL4A4P53420 AC087763.1-201ENST00000603391 286 ntBASIC6.13□□□□□ -1.43
COL4A4P53420 MIR378J-201ENST00000611988 109 ntBASIC6.13□□□□□ -1.43
COL4A4P53420 AL731566.2-201ENST00000618971 317 ntBASIC6.13□□□□□ -1.43
COL4A4P53420 MGAM-209ENST00000620571 6483 ntTSL 5 BASIC6.13□□□□□ -1.43
COL4A4P53420 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC6.13□□□□□ -1.43
COL4A4P53420 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL4A4P53420 ARMCX5-202ENST00000372742 2647 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
COL4A4P53420 CHRM3-201ENST00000255380 8780 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL4A4P53420 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC6.13□□□□□ -1.43
COL4A4P53420 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL4A4P53420 MFSD4BP1-201ENST00000513330 1552 ntBASIC6.13□□□□□ -1.43
COL4A4P53420 AL121722.1-201ENST00000638550 4849 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
COL4A4P53420 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL4A4P53420 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL4A4P53420 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL4A4P53420 EEF1A1P30-201ENST00000429708 1315 ntBASIC6.12□□□□□ -1.43
COL4A4P53420 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC6.12□□□□□ -1.43
COL4A4P53420 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
COL4A4P53420 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
COL4A4P53420 SSX3-202ENST00000376893 800 ntTSL 2 BASIC6.12□□□□□ -1.43
COL4A4P53420 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms