Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ZNF268-213ENST00000542986 3773 ntTSL 5 BASIC5.74□□□□□ -1.49
COL6A3P12111 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL6A3P12111 AL050331.2-201ENST00000457319 421 ntTSL 3 BASIC5.74□□□□□ -1.49
COL6A3P12111 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.74□□□□□ -1.49
COL6A3P12111 AC073916.1-201ENST00000545095 130 ntBASIC5.74□□□□□ -1.49
COL6A3P12111 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC5.74□□□□□ -1.49
COL6A3P12111 DHX40P1-201ENST00000588725 1412 ntBASIC5.74□□□□□ -1.49
COL6A3P12111 CD2-202ENST00000369478 1609 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL6A3P12111 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
COL6A3P12111 LINC01197-205ENST00000614853 1774 ntTSL 3 BASIC5.74□□□□□ -1.49
COL6A3P12111 LRRC37A16P-202ENST00000586022 3725 ntBASIC5.74□□□□□ -1.49
COL6A3P12111 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.74□□□□□ -1.49
COL6A3P12111 IARS-213ENST00000627121 4587 ntTSL 5 BASIC5.74□□□□□ -1.49
COL6A3P12111 CARF-208ENST00000428585 2513 ntTSL 2 BASIC5.74□□□□□ -1.49
COL6A3P12111 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL6A3P12111 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
COL6A3P12111 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL6A3P12111 PRICKLE2-AS1-201ENST00000482609 6505 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL6A3P12111 ATAD5-201ENST00000321990 6869 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL6A3P12111 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL6A3P12111 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
COL6A3P12111 RNA5SP113-201ENST00000410486 84 ntBASIC5.73□□□□□ -1.49
COL6A3P12111 AL713922.1-201ENST00000416477 747 ntBASIC5.73□□□□□ -1.49
COL6A3P12111 DDX39BP1-205ENST00000422507 192 ntBASIC5.73□□□□□ -1.49
COL6A3P12111 AC023141.6-201ENST00000429418 337 ntBASIC5.73□□□□□ -1.49
COL6A3P12111 RPS27AP12-201ENST00000429552 465 ntBASIC5.73□□□□□ -1.49
COL6A3P12111 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC5.73□□□□□ -1.49
COL6A3P12111 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC5.73□□□□□ -1.49
COL6A3P12111 AC009597.2-201ENST00000604659 592 ntBASIC5.73□□□□□ -1.49
COL6A3P12111 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL6A3P12111 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC5.73□□□□□ -1.49
COL6A3P12111 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL6A3P12111 PIEZO2-210ENST00000580640 8334 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
COL6A3P12111 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL6A3P12111 LIMCH1-216ENST00000512820 5071 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL6A3P12111 GDPD4-202ENST00000376217 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL6A3P12111 AL589993.1-201ENST00000407450 2524 ntBASIC5.73□□□□□ -1.49
COL6A3P12111 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL6A3P12111 HSPA4L-201ENST00000296464 10790 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL6A3P12111 IL2RA-203ENST00000379959 3176 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL6A3P12111 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL6A3P12111 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL6A3P12111 RPS3AP23-201ENST00000401762 784 ntBASIC5.73□□□□□ -1.49
COL6A3P12111 AC073143.1-201ENST00000436316 395 ntBASIC5.73□□□□□ -1.49
COL6A3P12111 AC112498.1-201ENST00000444401 332 ntBASIC5.73□□□□□ -1.49
COL6A3P12111 AC026726.1-201ENST00000512859 601 ntBASIC5.73□□□□□ -1.49
COL6A3P12111 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC5.73□□□□□ -1.49
COL6A3P12111 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC5.73□□□□□ -1.49
COL6A3P12111 ZNF250-201ENST00000292579 6364 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL6A3P12111 KIAA0355-201ENST00000299505 6717 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL6A3P12111 DROSHA-220ENST00000513349 4681 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL6A3P12111 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC5.73□□□□□ -1.49
COL6A3P12111 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL6A3P12111 AC017079.1-201ENST00000333650 415 ntBASIC5.73□□□□□ -1.49
COL6A3P12111 RNA5SP28-201ENST00000363841 119 ntBASIC5.73□□□□□ -1.49
COL6A3P12111 CASKP1-201ENST00000412870 582 ntBASIC5.73□□□□□ -1.49
COL6A3P12111 AC063943.1-201ENST00000465434 453 ntBASIC5.73□□□□□ -1.49
COL6A3P12111 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC5.73□□□□□ -1.49
COL6A3P12111 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC5.73□□□□□ -1.49
COL6A3P12111 uc_338.26-201ENST00000612659 160 ntBASIC5.73□□□□□ -1.49
COL6A3P12111 AC003992.1-201ENST00000635364 557 ntBASIC5.73□□□□□ -1.49
COL6A3P12111 OR1M1-202ENST00000641627 2535 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
COL6A3P12111 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL6A3P12111 PIEZO2-202ENST00000383408 9718 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
COL6A3P12111 BAZ2A-211ENST00000549884 6050 ntAPPRIS ALT2 TSL 2 BASIC5.73□□□□□ -1.49
COL6A3P12111 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC5.72□□□□□ -1.49
COL6A3P12111 MFSD8-239ENST00000641590 2479 ntBASIC5.72□□□□□ -1.49
COL6A3P12111 IL13RA2-202ENST00000371936 1498 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
COL6A3P12111 TRPM1-201ENST00000256552 5514 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL6A3P12111 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC5.72□□□□□ -1.49
COL6A3P12111 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL6A3P12111 AC005225.5-201ENST00000623547 2225 ntBASIC5.72□□□□□ -1.49
COL6A3P12111 ZNF521-214ENST00000584787 4327 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL6A3P12111 AL139415.1-201ENST00000424862 352 ntBASIC5.72□□□□□ -1.49
COL6A3P12111 CENPIP1-201ENST00000425713 902 ntBASIC5.72□□□□□ -1.49
COL6A3P12111 RPL38P3-201ENST00000484463 213 ntBASIC5.72□□□□□ -1.49
COL6A3P12111 AC013356.1-201ENST00000489027 564 ntBASIC5.72□□□□□ -1.49
COL6A3P12111 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
COL6A3P12111 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.72□□□□□ -1.49
COL6A3P12111 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC5.72□□□□□ -1.49
COL6A3P12111 AC015660.5-201ENST00000623238 564 ntBASIC5.72□□□□□ -1.49
COL6A3P12111 AP002364.1-201ENST00000623330 3386 ntBASIC5.72□□□□□ -1.49
COL6A3P12111 CDH12-202ENST00000504376 4160 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
COL6A3P12111 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC5.72□□□□□ -1.49
COL6A3P12111 DPYSL2-201ENST00000311151 4603 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL6A3P12111 AC011504.1-201ENST00000623331 4103 ntBASIC5.72□□□□□ -1.49
COL6A3P12111 AC078842.2-201ENST00000447529 1835 ntTSL 2 BASIC5.72□□□□□ -1.49
COL6A3P12111 IGF1R-201ENST00000268035 11803 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL6A3P12111 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.72□□□□□ -1.49
COL6A3P12111 CCT8P1-201ENST00000413611 1657 ntBASIC5.72□□□□□ -1.49
COL6A3P12111 ODF2L-201ENST00000294678 4267 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL6A3P12111 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC5.72□□□□□ -1.49
COL6A3P12111 DUTP4-201ENST00000424782 475 ntBASIC5.72□□□□□ -1.49
COL6A3P12111 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC5.72□□□□□ -1.49
COL6A3P12111 SNORA67.7-201ENST00000516664 135 ntBASIC5.72□□□□□ -1.49
COL6A3P12111 RNA5SP373-201ENST00000517271 95 ntBASIC5.72□□□□□ -1.49
COL6A3P12111 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL6A3P12111 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC5.72□□□□□ -1.49
COL6A3P12111 MIR4311-201ENST00000580794 100 ntBASIC5.72□□□□□ -1.49
COL6A3P12111 AC024220.1-201ENST00000603675 484 ntBASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 117.4 ms