Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC6.62□□□□□ -1.35
USP39Q53GS9 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC6.62□□□□□ -1.35
USP39Q53GS9 AC092140.2-201ENST00000618027 521 ntBASIC6.62□□□□□ -1.35
USP39Q53GS9 AL445493.3-201ENST00000619568 477 ntBASIC6.62□□□□□ -1.35
USP39Q53GS9 AC007275.1-201ENST00000621243 671 ntBASIC6.62□□□□□ -1.35
USP39Q53GS9 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
USP39Q53GS9 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
USP39Q53GS9 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
USP39Q53GS9 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
USP39Q53GS9 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC6.62□□□□□ -1.35
USP39Q53GS9 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
USP39Q53GS9 PAICS-208ENST00000514888 3340 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
USP39Q53GS9 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC6.61□□□□□ -1.35
USP39Q53GS9 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
USP39Q53GS9 FO082842.1-201ENST00000423552 1370 ntBASIC6.61□□□□□ -1.35
USP39Q53GS9 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
USP39Q53GS9 MTND4P4-201ENST00000439033 1366 ntBASIC6.61□□□□□ -1.35
USP39Q53GS9 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC6.61□□□□□ -1.35
USP39Q53GS9 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC6.61□□□□□ -1.35
USP39Q53GS9 OR7E25P-201ENST00000344844 931 ntBASIC6.61□□□□□ -1.35
USP39Q53GS9 Y_RNA.318-201ENST00000365131 97 ntBASIC6.61□□□□□ -1.35
USP39Q53GS9 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
USP39Q53GS9 LCN1P2-201ENST00000372030 223 ntBASIC6.61□□□□□ -1.35
USP39Q53GS9 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
USP39Q53GS9 GLS-203ENST00000409215 632 ntTSL 4 BASIC6.61□□□□□ -1.35
USP39Q53GS9 AC118754.1-201ENST00000416958 370 ntTSL 3 BASIC6.61□□□□□ -1.35
USP39Q53GS9 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC6.61□□□□□ -1.35
USP39Q53GS9 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC6.61□□□□□ -1.35
USP39Q53GS9 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC6.61□□□□□ -1.35
USP39Q53GS9 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC6.61□□□□□ -1.35
USP39Q53GS9 AC073464.3-201ENST00000422564 712 ntBASIC6.61□□□□□ -1.35
USP39Q53GS9 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC6.61□□□□□ -1.35
USP39Q53GS9 DNAJA1P5-201ENST00000440278 943 ntBASIC6.61□□□□□ -1.35
USP39Q53GS9 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC6.61□□□□□ -1.35
USP39Q53GS9 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC6.61□□□□□ -1.35
USP39Q53GS9 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC6.61□□□□□ -1.35
USP39Q53GS9 AL009048.1-201ENST00000450437 298 ntBASIC6.61□□□□□ -1.35
USP39Q53GS9 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC6.61□□□□□ -1.35
USP39Q53GS9 RPL5P12-201ENST00000477071 851 ntBASIC6.61□□□□□ -1.35
USP39Q53GS9 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC6.61□□□□□ -1.35
USP39Q53GS9 RPL19P11-201ENST00000495944 589 ntBASIC6.61□□□□□ -1.35
USP39Q53GS9 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
USP39Q53GS9 MORF4L2P1-201ENST00000503761 858 ntBASIC6.61□□□□□ -1.35
USP39Q53GS9 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC6.61□□□□□ -1.35
USP39Q53GS9 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC6.61□□□□□ -1.35
USP39Q53GS9 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC6.61□□□□□ -1.35
USP39Q53GS9 AP003548.1-201ENST00000523862 711 ntTSL 3 BASIC6.61□□□□□ -1.35
USP39Q53GS9 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
USP39Q53GS9 MYL2-203ENST00000548438 664 ntTSL 3 BASIC6.61□□□□□ -1.35
USP39Q53GS9 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC6.61□□□□□ -1.35
USP39Q53GS9 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC6.61□□□□□ -1.35
USP39Q53GS9 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
USP39Q53GS9 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC6.61□□□□□ -1.35
USP39Q53GS9 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC6.61□□□□□ -1.35
USP39Q53GS9 AC022022.2-201ENST00000602989 360 ntBASIC6.61□□□□□ -1.35
USP39Q53GS9 MTATP6P2-201ENST00000603319 678 ntBASIC6.61□□□□□ -1.35
USP39Q53GS9 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC6.61□□□□□ -1.35
USP39Q53GS9 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC6.61□□□□□ -1.35
USP39Q53GS9 AC026124.2-201ENST00000621847 656 ntBASIC6.61□□□□□ -1.35
USP39Q53GS9 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC6.61□□□□□ -1.35
USP39Q53GS9 LINC00598-209ENST00000635966 1148 ntTSL 5 BASIC6.61□□□□□ -1.35
USP39Q53GS9 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC6.61□□□□□ -1.35
USP39Q53GS9 Z97989.1-201ENST00000531702 2421 ntBASIC6.61□□□□□ -1.35
USP39Q53GS9 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC6.61□□□□□ -1.35
USP39Q53GS9 CCR2-204ENST00000445132 2386 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
USP39Q53GS9 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
USP39Q53GS9 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.61□□□□□ -1.35
USP39Q53GS9 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC6.61□□□□□ -1.35
USP39Q53GS9 CTNNA1P1-201ENST00000515849 2728 ntBASIC6.61□□□□□ -1.35
USP39Q53GS9 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC6.61□□□□□ -1.35
USP39Q53GS9 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC6.61□□□□□ -1.35
USP39Q53GS9 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
USP39Q53GS9 GIF-201ENST00000257248 1518 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
USP39Q53GS9 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC6.6□□□□□ -1.35
USP39Q53GS9 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
USP39Q53GS9 LINC01579-207ENST00000557481 3480 ntTSL 5 BASIC6.6□□□□□ -1.35
USP39Q53GS9 AC093278.2-201ENST00000564956 2485 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
USP39Q53GS9 EIF1-203ENST00000469257 2330 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
USP39Q53GS9 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
USP39Q53GS9 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC6.6□□□□□ -1.35
USP39Q53GS9 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC6.6□□□□□ -1.35
USP39Q53GS9 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
USP39Q53GS9 TTTY4B-201ENST00000420149 1346 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
USP39Q53GS9 TTTY4-201ENST00000436568 1346 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
USP39Q53GS9 TTTY4C-201ENST00000456123 1346 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
USP39Q53GS9 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC6.6□□□□□ -1.35
USP39Q53GS9 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
USP39Q53GS9 RN7SKP78-201ENST00000364711 318 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 AL607077.1-201ENST00000401718 499 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 AL139805.1-201ENST00000407837 289 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 VN1R51P-201ENST00000411675 945 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 MTND4P22-201ENST00000413116 1169 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 AL035422.1-201ENST00000414193 397 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 AC009518.1-202ENST00000415393 1229 ntTSL 2 BASIC6.6□□□□□ -1.35
USP39Q53GS9 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
USP39Q53GS9 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC6.6□□□□□ -1.35
USP39Q53GS9 OSTCP4-201ENST00000424397 449 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC6.6□□□□□ -1.35
USP39Q53GS9 AL354707.3-201ENST00000427308 331 ntBASIC6.6□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 114.7 ms