Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 AC018553.1-201ENST00000616682 1458 ntBASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.89■□□□□ 0.62
VPS29Q9UBQ0 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
VPS29Q9UBQ0 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
VPS29Q9UBQ0 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
VPS29Q9UBQ0 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.89■□□□□ 0.62
VPS29Q9UBQ0 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 MAP2K4P1-201ENST00000438453 1195 ntBASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 MIR4758-201ENST00000577688 71 ntBASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 AC116351.2-201ENST00000606540 1585 ntBASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS29Q9UBQ0 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS29Q9UBQ0 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS29Q9UBQ0 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.87■□□□□ 0.61
VPS29Q9UBQ0 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.87■□□□□ 0.61
VPS29Q9UBQ0 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
VPS29Q9UBQ0 PPP1R14BP2-201ENST00000426284 444 ntBASIC18.87■□□□□ 0.61
VPS29Q9UBQ0 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.87■□□□□ 0.61
VPS29Q9UBQ0 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC18.87■□□□□ 0.61
VPS29Q9UBQ0 BET1L-207ENST00000529614 560 ntTSL 5 BASIC18.87■□□□□ 0.61
VPS29Q9UBQ0 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS29Q9UBQ0 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
VPS29Q9UBQ0 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.87■□□□□ 0.61
VPS29Q9UBQ0 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC18.87■□□□□ 0.61
VPS29Q9UBQ0 AC005332.7-201ENST00000614046 2005 ntBASIC18.87■□□□□ 0.61
VPS29Q9UBQ0 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC18.87■□□□□ 0.61
VPS29Q9UBQ0 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.87■□□□□ 0.61
VPS29Q9UBQ0 PFKL-212ENST00000628044 129 ntTSL 3 BASIC18.87■□□□□ 0.61
VPS29Q9UBQ0 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.87■□□□□ 0.61
VPS29Q9UBQ0 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
VPS29Q9UBQ0 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
VPS29Q9UBQ0 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.87■□□□□ 0.61
VPS29Q9UBQ0 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
VPS29Q9UBQ0 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms