Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
PCIF1Q9H4Z3 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
PCIF1Q9H4Z3 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC21.58■■□□□ 1.05
PCIF1Q9H4Z3 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
PCIF1Q9H4Z3 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PCIF1Q9H4Z3 TFP1-202ENST00000475455 1573 ntBASIC21.58■■□□□ 1.05
PCIF1Q9H4Z3 AC009237.14-201ENST00000609975 1594 ntBASIC21.58■■□□□ 1.05
PCIF1Q9H4Z3 AP001271.2-201ENST00000624018 1556 ntBASIC21.58■■□□□ 1.05
PCIF1Q9H4Z3 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
PCIF1Q9H4Z3 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PCIF1Q9H4Z3 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PCIF1Q9H4Z3 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC21.58■■□□□ 1.05
PCIF1Q9H4Z3 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PCIF1Q9H4Z3 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC21.58■■□□□ 1.05
PCIF1Q9H4Z3 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC21.58■■□□□ 1.05
PCIF1Q9H4Z3 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC21.58■■□□□ 1.05
PCIF1Q9H4Z3 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PCIF1Q9H4Z3 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PCIF1Q9H4Z3 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.58■■□□□ 1.05
PCIF1Q9H4Z3 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
PCIF1Q9H4Z3 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
PCIF1Q9H4Z3 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.04
PCIF1Q9H4Z3 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC21.58■■□□□ 1.04
PCIF1Q9H4Z3 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
PCIF1Q9H4Z3 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
PCIF1Q9H4Z3 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCIF1Q9H4Z3 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC21.57■■□□□ 1.04
PCIF1Q9H4Z3 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCIF1Q9H4Z3 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCIF1Q9H4Z3 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCIF1Q9H4Z3 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCIF1Q9H4Z3 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
PCIF1Q9H4Z3 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCIF1Q9H4Z3 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCIF1Q9H4Z3 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCIF1Q9H4Z3 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCIF1Q9H4Z3 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC21.57■■□□□ 1.04
PCIF1Q9H4Z3 FAM201B-201ENST00000458407 597 ntBASIC21.57■■□□□ 1.04
PCIF1Q9H4Z3 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
PCIF1Q9H4Z3 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC21.57■■□□□ 1.04
PCIF1Q9H4Z3 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PCIF1Q9H4Z3 AC069544.1-201ENST00000609399 999 ntBASIC21.57■■□□□ 1.04
PCIF1Q9H4Z3 AC073648.6-201ENST00000641589 218 ntBASIC21.57■■□□□ 1.04
PCIF1Q9H4Z3 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCIF1Q9H4Z3 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCIF1Q9H4Z3 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC21.57■■□□□ 1.04
PCIF1Q9H4Z3 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCIF1Q9H4Z3 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCIF1Q9H4Z3 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PCIF1Q9H4Z3 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC21.57■■□□□ 1.04
PCIF1Q9H4Z3 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
PCIF1Q9H4Z3 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PCIF1Q9H4Z3 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PCIF1Q9H4Z3 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC21.56■■□□□ 1.04
PCIF1Q9H4Z3 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
PCIF1Q9H4Z3 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC21.56■■□□□ 1.04
PCIF1Q9H4Z3 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC21.56■■□□□ 1.04
PCIF1Q9H4Z3 AC128676.1-201ENST00000454392 318 ntBASIC21.56■■□□□ 1.04
PCIF1Q9H4Z3 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
PCIF1Q9H4Z3 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC21.56■■□□□ 1.04
PCIF1Q9H4Z3 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC21.56■■□□□ 1.04
PCIF1Q9H4Z3 AL121906.2-201ENST00000621597 723 ntBASIC21.56■■□□□ 1.04
PCIF1Q9H4Z3 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
PCIF1Q9H4Z3 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCIF1Q9H4Z3 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC21.56■■□□□ 1.04
PCIF1Q9H4Z3 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCIF1Q9H4Z3 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCIF1Q9H4Z3 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCIF1Q9H4Z3 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC21.55■■□□□ 1.04
PCIF1Q9H4Z3 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PCIF1Q9H4Z3 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PCIF1Q9H4Z3 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC21.55■■□□□ 1.04
PCIF1Q9H4Z3 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
PCIF1Q9H4Z3 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCIF1Q9H4Z3 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PCIF1Q9H4Z3 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC21.55■■□□□ 1.04
PCIF1Q9H4Z3 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC21.55■■□□□ 1.04
PCIF1Q9H4Z3 AL121829.2-201ENST00000620908 328 ntBASIC21.55■■□□□ 1.04
PCIF1Q9H4Z3 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCIF1Q9H4Z3 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC21.55■■□□□ 1.04
PCIF1Q9H4Z3 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCIF1Q9H4Z3 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCIF1Q9H4Z3 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC21.55■■□□□ 1.04
PCIF1Q9H4Z3 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCIF1Q9H4Z3 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PCIF1Q9H4Z3 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCIF1Q9H4Z3 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
PCIF1Q9H4Z3 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PCIF1Q9H4Z3 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PCIF1Q9H4Z3 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
PCIF1Q9H4Z3 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
PCIF1Q9H4Z3 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PCIF1Q9H4Z3 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PCIF1Q9H4Z3 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC21.54■■□□□ 1.04
PCIF1Q9H4Z3 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC21.54■■□□□ 1.04
PCIF1Q9H4Z3 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PCIF1Q9H4Z3 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
PCIF1Q9H4Z3 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC21.54■■□□□ 1.04
PCIF1Q9H4Z3 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC21.54■■□□□ 1.04
PCIF1Q9H4Z3 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms