Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD1Q96NR3 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD1Q96NR3 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD1Q96NR3 KRASP1-201ENST00000407852 552 ntBASIC18.59■□□□□ 0.57
PTCHD1Q96NR3 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
PTCHD1Q96NR3 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.59■□□□□ 0.57
PTCHD1Q96NR3 RNF121-214ENST00000533380 870 ntTSL 3 BASIC18.59■□□□□ 0.57
PTCHD1Q96NR3 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.59■□□□□ 0.57
PTCHD1Q96NR3 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC18.59■□□□□ 0.57
PTCHD1Q96NR3 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC18.59■□□□□ 0.57
PTCHD1Q96NR3 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD1Q96NR3 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD1Q96NR3 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD1Q96NR3 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD1Q96NR3 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD1Q96NR3 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.59■□□□□ 0.57
PTCHD1Q96NR3 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.59■□□□□ 0.57
PTCHD1Q96NR3 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD1Q96NR3 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD1Q96NR3 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD1Q96NR3 AC018553.1-201ENST00000616682 1458 ntBASIC18.58■□□□□ 0.57
PTCHD1Q96NR3 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
PTCHD1Q96NR3 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PTCHD1Q96NR3 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.58■□□□□ 0.57
PTCHD1Q96NR3 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
PTCHD1Q96NR3 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
PTCHD1Q96NR3 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
PTCHD1Q96NR3 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
PTCHD1Q96NR3 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PTCHD1Q96NR3 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PTCHD1Q96NR3 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PTCHD1Q96NR3 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
PTCHD1Q96NR3 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PTCHD1Q96NR3 PEX7-202ENST00000367756 680 ntTSL 3 BASIC18.58■□□□□ 0.56
PTCHD1Q96NR3 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PTCHD1Q96NR3 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
PTCHD1Q96NR3 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC18.58■□□□□ 0.56
PTCHD1Q96NR3 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
PTCHD1Q96NR3 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PTCHD1Q96NR3 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PTCHD1Q96NR3 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.58■□□□□ 0.56
PTCHD1Q96NR3 AC099778.1-201ENST00000568593 1911 ntBASIC18.58■□□□□ 0.56
PTCHD1Q96NR3 AC116351.2-201ENST00000606540 1585 ntBASIC18.58■□□□□ 0.56
PTCHD1Q96NR3 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
PTCHD1Q96NR3 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.58■□□□□ 0.56
PTCHD1Q96NR3 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
PTCHD1Q96NR3 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.58■□□□□ 0.56
PTCHD1Q96NR3 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PTCHD1Q96NR3 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTCHD1Q96NR3 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTCHD1Q96NR3 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTCHD1Q96NR3 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.57■□□□□ 0.56
PTCHD1Q96NR3 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTCHD1Q96NR3 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.57■□□□□ 0.56
PTCHD1Q96NR3 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTCHD1Q96NR3 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.57■□□□□ 0.56
PTCHD1Q96NR3 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.57■□□□□ 0.56
PTCHD1Q96NR3 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTCHD1Q96NR3 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.57■□□□□ 0.56
PTCHD1Q96NR3 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PTCHD1Q96NR3 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.57■□□□□ 0.56
PTCHD1Q96NR3 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.57■□□□□ 0.56
PTCHD1Q96NR3 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.57■□□□□ 0.56
PTCHD1Q96NR3 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.57■□□□□ 0.56
PTCHD1Q96NR3 AC124016.1-201ENST00000609552 612 ntBASIC18.57■□□□□ 0.56
PTCHD1Q96NR3 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
PTCHD1Q96NR3 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC18.57■□□□□ 0.56
PTCHD1Q96NR3 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
PTCHD1Q96NR3 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.57■□□□□ 0.56
PTCHD1Q96NR3 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PTCHD1Q96NR3 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTCHD1Q96NR3 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTCHD1Q96NR3 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.56■□□□□ 0.56
PTCHD1Q96NR3 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC18.56■□□□□ 0.56
PTCHD1Q96NR3 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PTCHD1Q96NR3 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PTCHD1Q96NR3 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTCHD1Q96NR3 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTCHD1Q96NR3 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
PTCHD1Q96NR3 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PTCHD1Q96NR3 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.56■□□□□ 0.56
PTCHD1Q96NR3 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
PTCHD1Q96NR3 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
PTCHD1Q96NR3 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.56■□□□□ 0.56
PTCHD1Q96NR3 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC18.56■□□□□ 0.56
PTCHD1Q96NR3 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC18.56■□□□□ 0.56
PTCHD1Q96NR3 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC18.56■□□□□ 0.56
PTCHD1Q96NR3 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.56■□□□□ 0.56
PTCHD1Q96NR3 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTCHD1Q96NR3 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.56■□□□□ 0.56
PTCHD1Q96NR3 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.56■□□□□ 0.56
PTCHD1Q96NR3 AC110285.5-201ENST00000611501 352 ntBASIC18.56■□□□□ 0.56
PTCHD1Q96NR3 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.56■□□□□ 0.56
PTCHD1Q96NR3 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTCHD1Q96NR3 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTCHD1Q96NR3 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PTCHD1Q96NR3 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PTCHD1Q96NR3 AL691432.2-201ENST00000607222 2038 ntBASIC18.56■□□□□ 0.56
PTCHD1Q96NR3 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms