Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 BRI3-207ENST00000539286 699 ntTSL 2 BASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 SLC7A5P1-201ENST00000568957 537 ntBASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
DEPDC4Q8N2C3 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
DEPDC4Q8N2C3 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
DEPDC4Q8N2C3 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
DEPDC4Q8N2C3 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
DEPDC4Q8N2C3 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
DEPDC4Q8N2C3 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.52
DEPDC4Q8N2C3 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
DEPDC4Q8N2C3 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
DEPDC4Q8N2C3 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
DEPDC4Q8N2C3 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18.27■□□□□ 0.52
DEPDC4Q8N2C3 GXYLT1P5-201ENST00000614548 1189 ntBASIC18.27■□□□□ 0.52
DEPDC4Q8N2C3 TFG-210ENST00000620299 1289 ntTSL 5 BASIC18.27■□□□□ 0.52
DEPDC4Q8N2C3 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC18.27■□□□□ 0.52
DEPDC4Q8N2C3 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
DEPDC4Q8N2C3 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.27■□□□□ 0.52
DEPDC4Q8N2C3 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
DEPDC4Q8N2C3 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
DEPDC4Q8N2C3 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
DEPDC4Q8N2C3 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
DEPDC4Q8N2C3 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
DEPDC4Q8N2C3 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.27■□□□□ 0.51
DEPDC4Q8N2C3 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.27■□□□□ 0.51
DEPDC4Q8N2C3 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
DEPDC4Q8N2C3 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
DEPDC4Q8N2C3 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
DEPDC4Q8N2C3 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.26■□□□□ 0.51
DEPDC4Q8N2C3 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
DEPDC4Q8N2C3 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
DEPDC4Q8N2C3 AC090340.1-201ENST00000620778 4980 ntBASIC18.26■□□□□ 0.51
DEPDC4Q8N2C3 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
DEPDC4Q8N2C3 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.26■□□□□ 0.51
DEPDC4Q8N2C3 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
DEPDC4Q8N2C3 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
DEPDC4Q8N2C3 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
DEPDC4Q8N2C3 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
DEPDC4Q8N2C3 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.26■□□□□ 0.51
DEPDC4Q8N2C3 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
DEPDC4Q8N2C3 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
DEPDC4Q8N2C3 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
DEPDC4Q8N2C3 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.26■□□□□ 0.51
DEPDC4Q8N2C3 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
DEPDC4Q8N2C3 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
DEPDC4Q8N2C3 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
DEPDC4Q8N2C3 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.26■□□□□ 0.51
DEPDC4Q8N2C3 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
DEPDC4Q8N2C3 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
DEPDC4Q8N2C3 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
DEPDC4Q8N2C3 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
DEPDC4Q8N2C3 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.26■□□□□ 0.51
DEPDC4Q8N2C3 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
DEPDC4Q8N2C3 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
DEPDC4Q8N2C3 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.25■□□□□ 0.51
DEPDC4Q8N2C3 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
DEPDC4Q8N2C3 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
DEPDC4Q8N2C3 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
DEPDC4Q8N2C3 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
DEPDC4Q8N2C3 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
DEPDC4Q8N2C3 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC18.25■□□□□ 0.51
DEPDC4Q8N2C3 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
DEPDC4Q8N2C3 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
DEPDC4Q8N2C3 RAP2CP1-201ENST00000605103 478 ntBASIC18.25■□□□□ 0.51
DEPDC4Q8N2C3 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
DEPDC4Q8N2C3 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
DEPDC4Q8N2C3 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
DEPDC4Q8N2C3 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC18.25■□□□□ 0.51
DEPDC4Q8N2C3 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
DEPDC4Q8N2C3 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
DEPDC4Q8N2C3 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
DEPDC4Q8N2C3 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.25■□□□□ 0.51
DEPDC4Q8N2C3 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
DEPDC4Q8N2C3 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.25■□□□□ 0.51
DEPDC4Q8N2C3 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms