Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 REXO1L10P-201ENST00000615707 1290 ntBASIC16.94■□□□□ 0.3
USF3Q68DE3 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USF3Q68DE3 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
USF3Q68DE3 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
USF3Q68DE3 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USF3Q68DE3 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
USF3Q68DE3 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USF3Q68DE3 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USF3Q68DE3 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USF3Q68DE3 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USF3Q68DE3 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USF3Q68DE3 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
USF3Q68DE3 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USF3Q68DE3 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
USF3Q68DE3 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
USF3Q68DE3 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
USF3Q68DE3 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC16.94■□□□□ 0.3
USF3Q68DE3 AC023632.3-201ENST00000521633 145 ntBASIC16.94■□□□□ 0.3
USF3Q68DE3 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USF3Q68DE3 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USF3Q68DE3 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC16.94■□□□□ 0.3
USF3Q68DE3 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC16.94■□□□□ 0.3
USF3Q68DE3 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC16.94■□□□□ 0.3
USF3Q68DE3 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
USF3Q68DE3 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USF3Q68DE3 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USF3Q68DE3 AC079598.2-202ENST00000546624 1451 ntBASIC16.94■□□□□ 0.3
USF3Q68DE3 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USF3Q68DE3 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
USF3Q68DE3 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USF3Q68DE3 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
USF3Q68DE3 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC16.93■□□□□ 0.3
USF3Q68DE3 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC16.93■□□□□ 0.3
USF3Q68DE3 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
USF3Q68DE3 AL031963.3-201ENST00000606441 850 ntBASIC16.93■□□□□ 0.3
USF3Q68DE3 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC16.93■□□□□ 0.3
USF3Q68DE3 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USF3Q68DE3 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
USF3Q68DE3 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USF3Q68DE3 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
USF3Q68DE3 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC16.93■□□□□ 0.3
USF3Q68DE3 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
USF3Q68DE3 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
USF3Q68DE3 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USF3Q68DE3 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC16.93■□□□□ 0.3
USF3Q68DE3 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC16.93■□□□□ 0.3
USF3Q68DE3 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USF3Q68DE3 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC16.93■□□□□ 0.3
USF3Q68DE3 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC16.93■□□□□ 0.3
USF3Q68DE3 AC004264.1-201ENST00000608354 794 ntBASIC16.93■□□□□ 0.3
USF3Q68DE3 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC16.93■□□□□ 0.3
USF3Q68DE3 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC16.93■□□□□ 0.3
USF3Q68DE3 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USF3Q68DE3 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC16.93■□□□□ 0.3
USF3Q68DE3 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USF3Q68DE3 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
USF3Q68DE3 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC16.93■□□□□ 0.3
USF3Q68DE3 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
USF3Q68DE3 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
USF3Q68DE3 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC16.92■□□□□ 0.3
USF3Q68DE3 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC16.92■□□□□ 0.3
USF3Q68DE3 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
USF3Q68DE3 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USF3Q68DE3 KRT18P57-201ENST00000443599 1254 ntBASIC16.92■□□□□ 0.3
USF3Q68DE3 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
USF3Q68DE3 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USF3Q68DE3 AC092865.7-201ENST00000641832 219 ntBASIC16.92■□□□□ 0.3
USF3Q68DE3 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USF3Q68DE3 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USF3Q68DE3 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC16.92■□□□□ 0.3
USF3Q68DE3 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
USF3Q68DE3 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC16.92■□□□□ 0.3
USF3Q68DE3 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
USF3Q68DE3 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USF3Q68DE3 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
USF3Q68DE3 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
USF3Q68DE3 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC16.92■□□□□ 0.3
USF3Q68DE3 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
USF3Q68DE3 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
USF3Q68DE3 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC16.92■□□□□ 0.3
USF3Q68DE3 KRT18P35-201ENST00000510488 1269 ntBASIC16.92■□□□□ 0.3
USF3Q68DE3 AC145285.6-201ENST00000604632 637 ntBASIC16.92■□□□□ 0.3
USF3Q68DE3 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USF3Q68DE3 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC16.91■□□□□ 0.3
USF3Q68DE3 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
USF3Q68DE3 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
USF3Q68DE3 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USF3Q68DE3 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USF3Q68DE3 AFG3L1P-217ENST00000557444 2447 ntBASIC16.91■□□□□ 0.3
USF3Q68DE3 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USF3Q68DE3 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USF3Q68DE3 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC16.91■□□□□ 0.3
USF3Q68DE3 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC16.91■□□□□ 0.3
USF3Q68DE3 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC16.91■□□□□ 0.3
USF3Q68DE3 RBM17P1-201ENST00000453646 1190 ntBASIC16.91■□□□□ 0.3
USF3Q68DE3 FDX2-207ENST00000494368 584 ntTSL 4 BASIC16.91■□□□□ 0.3
USF3Q68DE3 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC16.91■□□□□ 0.3
USF3Q68DE3 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC16.91■□□□□ 0.3
USF3Q68DE3 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
USF3Q68DE3 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms