Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC23.79■■□□□ 1.4
VPS53Q5VIR6 POM121L13P-201ENST00000422362 380 ntBASIC23.79■■□□□ 1.4
VPS53Q5VIR6 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC23.79■■□□□ 1.4
VPS53Q5VIR6 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC23.79■■□□□ 1.4
VPS53Q5VIR6 THEM4-205ENST00000489410 643 ntTSL 2 BASIC23.79■■□□□ 1.4
VPS53Q5VIR6 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC23.79■■□□□ 1.4
VPS53Q5VIR6 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC23.79■■□□□ 1.4
VPS53Q5VIR6 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC23.79■■□□□ 1.4
VPS53Q5VIR6 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
VPS53Q5VIR6 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
VPS53Q5VIR6 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC23.79■■□□□ 1.4
VPS53Q5VIR6 STK25-204ENST00000405585 1643 ntTSL 2 BASIC23.79■■□□□ 1.4
VPS53Q5VIR6 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC23.79■■□□□ 1.4
VPS53Q5VIR6 AC125437.2-201ENST00000625180 2167 ntBASIC23.79■■□□□ 1.4
VPS53Q5VIR6 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
VPS53Q5VIR6 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
VPS53Q5VIR6 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC23.79■■□□□ 1.4
VPS53Q5VIR6 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
VPS53Q5VIR6 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
VPS53Q5VIR6 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
VPS53Q5VIR6 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
VPS53Q5VIR6 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
VPS53Q5VIR6 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
VPS53Q5VIR6 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC23.78■■□□□ 1.4
VPS53Q5VIR6 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
VPS53Q5VIR6 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC23.78■■□□□ 1.4
VPS53Q5VIR6 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC23.78■■□□□ 1.4
VPS53Q5VIR6 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
VPS53Q5VIR6 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
VPS53Q5VIR6 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC23.78■■□□□ 1.4
VPS53Q5VIR6 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC23.78■■□□□ 1.4
VPS53Q5VIR6 AC006058.3-201ENST00000606217 1069 ntBASIC23.78■■□□□ 1.4
VPS53Q5VIR6 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
VPS53Q5VIR6 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC23.78■■□□□ 1.4
VPS53Q5VIR6 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
VPS53Q5VIR6 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
VPS53Q5VIR6 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC23.78■■□□□ 1.4
VPS53Q5VIR6 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
VPS53Q5VIR6 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
VPS53Q5VIR6 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
VPS53Q5VIR6 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
VPS53Q5VIR6 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
VPS53Q5VIR6 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC23.77■■□□□ 1.4
VPS53Q5VIR6 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
VPS53Q5VIR6 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
VPS53Q5VIR6 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
VPS53Q5VIR6 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
VPS53Q5VIR6 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
VPS53Q5VIR6 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
VPS53Q5VIR6 ABHD17AP6-201ENST00000458502 1044 ntBASIC23.77■■□□□ 1.4
VPS53Q5VIR6 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC23.77■■□□□ 1.4
VPS53Q5VIR6 AC073648.6-201ENST00000641589 218 ntBASIC23.77■■□□□ 1.4
VPS53Q5VIR6 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC23.77■■□□□ 1.4
VPS53Q5VIR6 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
VPS53Q5VIR6 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
VPS53Q5VIR6 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC23.77■■□□□ 1.4
VPS53Q5VIR6 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
VPS53Q5VIR6 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
VPS53Q5VIR6 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC23.76■■□□□ 1.39
VPS53Q5VIR6 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
VPS53Q5VIR6 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
VPS53Q5VIR6 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
VPS53Q5VIR6 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
VPS53Q5VIR6 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC23.76■■□□□ 1.39
VPS53Q5VIR6 AC128676.1-201ENST00000454392 318 ntBASIC23.76■■□□□ 1.39
VPS53Q5VIR6 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC23.76■■□□□ 1.39
VPS53Q5VIR6 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC23.76■■□□□ 1.39
VPS53Q5VIR6 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
VPS53Q5VIR6 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
VPS53Q5VIR6 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
VPS53Q5VIR6 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
VPS53Q5VIR6 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC23.75■■□□□ 1.39
VPS53Q5VIR6 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC23.75■■□□□ 1.39
VPS53Q5VIR6 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
VPS53Q5VIR6 TMEM179-206ENST00000616017 1645 ntBASIC23.75■■□□□ 1.39
VPS53Q5VIR6 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
VPS53Q5VIR6 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
VPS53Q5VIR6 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
VPS53Q5VIR6 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
VPS53Q5VIR6 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC23.75■■□□□ 1.39
VPS53Q5VIR6 AC069544.1-201ENST00000609399 999 ntBASIC23.75■■□□□ 1.39
VPS53Q5VIR6 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC23.75■■□□□ 1.39
VPS53Q5VIR6 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
VPS53Q5VIR6 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
VPS53Q5VIR6 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
VPS53Q5VIR6 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
VPS53Q5VIR6 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC23.74■■□□□ 1.39
VPS53Q5VIR6 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS53Q5VIR6 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
VPS53Q5VIR6 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS53Q5VIR6 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS53Q5VIR6 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS53Q5VIR6 FAM201B-201ENST00000458407 597 ntBASIC23.74■■□□□ 1.39
VPS53Q5VIR6 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
VPS53Q5VIR6 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS53Q5VIR6 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS53Q5VIR6 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC23.74■■□□□ 1.39
VPS53Q5VIR6 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
VPS53Q5VIR6 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC23.74■■□□□ 1.39
VPS53Q5VIR6 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms