Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.64■□□□□ 0.89
EPHB3P54753 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
EPHB3P54753 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.64■□□□□ 0.89
EPHB3P54753 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
EPHB3P54753 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
EPHB3P54753 KRT8P9-201ENST00000558927 1449 ntBASIC20.63■□□□□ 0.89
EPHB3P54753 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.63■□□□□ 0.89
EPHB3P54753 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
EPHB3P54753 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
EPHB3P54753 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
EPHB3P54753 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
EPHB3P54753 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.63■□□□□ 0.89
EPHB3P54753 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.63■□□□□ 0.89
EPHB3P54753 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
EPHB3P54753 FITM1-202ENST00000559294 800 ntBASIC20.63■□□□□ 0.89
EPHB3P54753 AC145285.6-201ENST00000604632 637 ntBASIC20.63■□□□□ 0.89
EPHB3P54753 MIR6786-201ENST00000616843 113 ntBASIC20.63■□□□□ 0.89
EPHB3P54753 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.63■□□□□ 0.89
EPHB3P54753 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
EPHB3P54753 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
EPHB3P54753 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
EPHB3P54753 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
EPHB3P54753 BX119927.1-201ENST00000636596 1552 ntBASIC20.63■□□□□ 0.89
EPHB3P54753 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
EPHB3P54753 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.62■□□□□ 0.89
EPHB3P54753 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
EPHB3P54753 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
EPHB3P54753 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
EPHB3P54753 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
EPHB3P54753 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.62■□□□□ 0.89
EPHB3P54753 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
EPHB3P54753 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
EPHB3P54753 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
EPHB3P54753 RCN1P1-201ENST00000400413 996 ntBASIC20.62■□□□□ 0.89
EPHB3P54753 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.62■□□□□ 0.89
EPHB3P54753 AL390955.1-201ENST00000428694 934 ntBASIC20.62■□□□□ 0.89
EPHB3P54753 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
EPHB3P54753 NAPSB-206ENST00000562112 1266 ntBASIC20.62■□□□□ 0.89
EPHB3P54753 AC010331.1-201ENST00000611423 582 ntBASIC20.62■□□□□ 0.89
EPHB3P54753 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
EPHB3P54753 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
EPHB3P54753 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
EPHB3P54753 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.62■□□□□ 0.89
EPHB3P54753 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
EPHB3P54753 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
EPHB3P54753 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
EPHB3P54753 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
EPHB3P54753 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
EPHB3P54753 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
EPHB3P54753 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
EPHB3P54753 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
EPHB3P54753 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
EPHB3P54753 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.61■□□□□ 0.89
EPHB3P54753 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.61■□□□□ 0.89
EPHB3P54753 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.61■□□□□ 0.89
EPHB3P54753 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
EPHB3P54753 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.61■□□□□ 0.89
EPHB3P54753 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.61■□□□□ 0.89
EPHB3P54753 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.61■□□□□ 0.89
EPHB3P54753 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
EPHB3P54753 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
EPHB3P54753 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC20.61■□□□□ 0.89
EPHB3P54753 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC20.61■□□□□ 0.89
EPHB3P54753 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.61■□□□□ 0.89
EPHB3P54753 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.61■□□□□ 0.89
EPHB3P54753 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.61■□□□□ 0.89
EPHB3P54753 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
EPHB3P54753 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC20.61■□□□□ 0.89
EPHB3P54753 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.61■□□□□ 0.89
EPHB3P54753 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
EPHB3P54753 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
EPHB3P54753 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.6■□□□□ 0.89
EPHB3P54753 LINC01568-207ENST00000641790 1380 ntBASIC20.6■□□□□ 0.89
EPHB3P54753 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
EPHB3P54753 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
EPHB3P54753 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
EPHB3P54753 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.6■□□□□ 0.89
EPHB3P54753 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.6■□□□□ 0.89
EPHB3P54753 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
EPHB3P54753 TK2-213ENST00000563369 882 ntTSL 5 BASIC20.6■□□□□ 0.89
EPHB3P54753 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.6■□□□□ 0.89
EPHB3P54753 AC020907.5-201ENST00000624372 1936 ntBASIC20.6■□□□□ 0.89
EPHB3P54753 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
EPHB3P54753 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
EPHB3P54753 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.6■□□□□ 0.89
EPHB3P54753 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC20.59■□□□□ 0.89
EPHB3P54753 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
EPHB3P54753 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
EPHB3P54753 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
EPHB3P54753 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
EPHB3P54753 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
EPHB3P54753 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
EPHB3P54753 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
EPHB3P54753 AC004980.1-204ENST00000429707 299 ntBASIC20.59■□□□□ 0.89
EPHB3P54753 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
EPHB3P54753 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC20.59■□□□□ 0.89
EPHB3P54753 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC20.59■□□□□ 0.89
EPHB3P54753 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.59■□□□□ 0.89
EPHB3P54753 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.59■□□□□ 0.89
EPHB3P54753 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms