Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC27.45■■□□□ 1.99
MSH6P52701 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.99
MSH6P52701 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
MSH6P52701 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC27.45■■□□□ 1.98
MSH6P52701 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC27.45■■□□□ 1.98
MSH6P52701 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
MSH6P52701 AC242852.2-201ENST00000615738 1807 ntBASIC27.45■■□□□ 1.98
MSH6P52701 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
MSH6P52701 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC27.45■■□□□ 1.98
MSH6P52701 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC27.45■■□□□ 1.98
MSH6P52701 ZNF444P1-201ENST00000559497 298 ntBASIC27.45■■□□□ 1.98
MSH6P52701 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC27.45■■□□□ 1.98
MSH6P52701 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC27.45■■□□□ 1.98
MSH6P52701 GPALPP1-207ENST00000611650 899 ntBASIC27.45■■□□□ 1.98
MSH6P52701 HLA-A-209ENST00000638375 975 ntBASIC27.45■■□□□ 1.98
MSH6P52701 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
MSH6P52701 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
MSH6P52701 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
MSH6P52701 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC27.44■■□□□ 1.98
MSH6P52701 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC27.44■■□□□ 1.98
MSH6P52701 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
MSH6P52701 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
MSH6P52701 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC27.44■■□□□ 1.98
MSH6P52701 AC023511.2-201ENST00000618803 211 ntBASIC27.44■■□□□ 1.98
MSH6P52701 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
MSH6P52701 KRT8P17-201ENST00000453110 1448 ntBASIC27.44■■□□□ 1.98
MSH6P52701 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
MSH6P52701 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
MSH6P52701 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
MSH6P52701 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC27.43■■□□□ 1.98
MSH6P52701 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC27.43■■□□□ 1.98
MSH6P52701 AC112907.2-201ENST00000448639 330 ntBASIC27.43■■□□□ 1.98
MSH6P52701 TFP1-202ENST00000475455 1573 ntBASIC27.43■■□□□ 1.98
MSH6P52701 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC27.43■■□□□ 1.98
MSH6P52701 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC27.43■■□□□ 1.98
MSH6P52701 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
MSH6P52701 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC27.43■■□□□ 1.98
MSH6P52701 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC27.43■■□□□ 1.98
MSH6P52701 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC27.43■■□□□ 1.98
MSH6P52701 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
MSH6P52701 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
MSH6P52701 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
MSH6P52701 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
MSH6P52701 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
MSH6P52701 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
MSH6P52701 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
MSH6P52701 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC27.42■■□□□ 1.98
MSH6P52701 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
MSH6P52701 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
MSH6P52701 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
MSH6P52701 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC27.42■■□□□ 1.98
MSH6P52701 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
MSH6P52701 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC27.42■■□□□ 1.98
MSH6P52701 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
MSH6P52701 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
MSH6P52701 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC27.41■■□□□ 1.98
MSH6P52701 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
MSH6P52701 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
MSH6P52701 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC27.41■■□□□ 1.98
MSH6P52701 SNX5-210ENST00000481323 562 ntTSL 3 BASIC27.41■■□□□ 1.98
MSH6P52701 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC27.41■■□□□ 1.98
MSH6P52701 PRR29-207ENST00000580752 458 ntTSL 3 BASIC27.41■■□□□ 1.98
MSH6P52701 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
MSH6P52701 BCL10-202ENST00000620248 774 ntTSL 5 BASIC27.41■■□□□ 1.98
MSH6P52701 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC27.41■■□□□ 1.98
MSH6P52701 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC27.41■■□□□ 1.98
MSH6P52701 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
MSH6P52701 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC27.41■■□□□ 1.98
MSH6P52701 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC27.41■■□□□ 1.98
MSH6P52701 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
MSH6P52701 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
MSH6P52701 PARN-205ENST00000539279 1557 ntTSL 2 BASIC27.41■■□□□ 1.98
MSH6P52701 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC27.4■■□□□ 1.98
MSH6P52701 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
MSH6P52701 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
MSH6P52701 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
MSH6P52701 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
MSH6P52701 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
MSH6P52701 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC27.4■■□□□ 1.98
MSH6P52701 SDHD-206ENST00000528182 754 ntTSL 3 BASIC27.4■■□□□ 1.98
MSH6P52701 DFFB-212ENST00000625756 649 ntTSL 5 BASIC27.4■■□□□ 1.98
MSH6P52701 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC27.4■■□□□ 1.98
MSH6P52701 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC27.4■■□□□ 1.98
MSH6P52701 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC27.4■■□□□ 1.98
MSH6P52701 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
MSH6P52701 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
MSH6P52701 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC27.4■■□□□ 1.98
MSH6P52701 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
MSH6P52701 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC27.39■■□□□ 1.98
MSH6P52701 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
MSH6P52701 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
MSH6P52701 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
MSH6P52701 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC27.39■■□□□ 1.98
MSH6P52701 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC27.39■■□□□ 1.98
MSH6P52701 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC27.39■■□□□ 1.98
MSH6P52701 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC27.39■■□□□ 1.98
MSH6P52701 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC27.39■■□□□ 1.98
MSH6P52701 AC006538.3-201ENST00000612495 578 ntBASIC27.39■■□□□ 1.98
MSH6P52701 NPAP1P7-201ENST00000613027 823 ntBASIC27.39■■□□□ 1.98
MSH6P52701 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms