Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC15□□□□□ -0.01
HLA-DMBP28068 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HLA-DMBP28068 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC15□□□□□ -0.01
HLA-DMBP28068 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HLA-DMBP28068 GPX1P1-201ENST00000388829 606 ntBASIC15□□□□□ -0.01
HLA-DMBP28068 NCF1B-203ENST00000435988 1254 ntBASIC15□□□□□ -0.01
HLA-DMBP28068 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC15□□□□□ -0.01
HLA-DMBP28068 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC15□□□□□ -0.01
HLA-DMBP28068 AC104771.1-201ENST00000603335 964 ntBASIC15□□□□□ -0.01
HLA-DMBP28068 AC100791.3-201ENST00000617619 330 ntBASIC15□□□□□ -0.01
HLA-DMBP28068 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC15□□□□□ -0.01
HLA-DMBP28068 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC15□□□□□ -0.01
HLA-DMBP28068 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HLA-DMBP28068 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
HLA-DMBP28068 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC15□□□□□ -0.01
HLA-DMBP28068 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HLA-DMBP28068 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC15□□□□□ -0.01
HLA-DMBP28068 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC15□□□□□ -0.01
HLA-DMBP28068 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
HLA-DMBP28068 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HLA-DMBP28068 AL020996.1-203ENST00000536896 2307 ntBASIC14.99□□□□□ -0.01
HLA-DMBP28068 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HLA-DMBP28068 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC14.99□□□□□ -0.01
HLA-DMBP28068 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HLA-DMBP28068 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HLA-DMBP28068 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HLA-DMBP28068 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HLA-DMBP28068 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC14.99□□□□□ -0.01
HLA-DMBP28068 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC14.99□□□□□ -0.01
HLA-DMBP28068 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC14.99□□□□□ -0.01
HLA-DMBP28068 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC14.99□□□□□ -0.01
HLA-DMBP28068 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
HLA-DMBP28068 PARP1-210ENST00000629232 477 ntTSL 5 BASIC14.99□□□□□ -0.01
HLA-DMBP28068 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HLA-DMBP28068 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
HLA-DMBP28068 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HLA-DMBP28068 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HLA-DMBP28068 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC14.99□□□□□ -0.01
HLA-DMBP28068 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
HLA-DMBP28068 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
HLA-DMBP28068 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HLA-DMBP28068 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HLA-DMBP28068 KRT8P20-201ENST00000423953 1409 ntBASIC14.99□□□□□ -0.01
HLA-DMBP28068 KRT16P6-202ENST00000425692 1426 ntBASIC14.99□□□□□ -0.01
HLA-DMBP28068 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HLA-DMBP28068 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
HLA-DMBP28068 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC14.99□□□□□ -0.01
HLA-DMBP28068 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HLA-DMBP28068 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
HLA-DMBP28068 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HLA-DMBP28068 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
HLA-DMBP28068 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HLA-DMBP28068 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC14.98□□□□□ -0.01
HLA-DMBP28068 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
HLA-DMBP28068 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
HLA-DMBP28068 AC009237.14-201ENST00000609975 1594 ntBASIC14.98□□□□□ -0.01
HLA-DMBP28068 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC14.98□□□□□ -0.01
HLA-DMBP28068 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC14.98□□□□□ -0.01
HLA-DMBP28068 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
HLA-DMBP28068 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HLA-DMBP28068 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HLA-DMBP28068 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HLA-DMBP28068 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HLA-DMBP28068 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC14.98□□□□□ -0.01
HLA-DMBP28068 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC14.98□□□□□ -0.01
HLA-DMBP28068 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HLA-DMBP28068 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HLA-DMBP28068 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HLA-DMBP28068 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HLA-DMBP28068 AL355802.2-201ENST00000402069 882 ntBASIC14.98□□□□□ -0.01
HLA-DMBP28068 APTR-203ENST00000430801 583 ntTSL 5 BASIC14.98□□□□□ -0.01
HLA-DMBP28068 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC14.98□□□□□ -0.01
HLA-DMBP28068 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC14.98□□□□□ -0.01
HLA-DMBP28068 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
HLA-DMBP28068 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HLA-DMBP28068 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC14.98□□□□□ -0.01
HLA-DMBP28068 AC069236.1-201ENST00000604339 616 ntBASIC14.98□□□□□ -0.01
HLA-DMBP28068 AL121832.2-201ENST00000610979 668 ntBASIC14.98□□□□□ -0.01
HLA-DMBP28068 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HLA-DMBP28068 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC14.98□□□□□ -0.01
HLA-DMBP28068 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC14.98□□□□□ -0.01
HLA-DMBP28068 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HLA-DMBP28068 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC14.98□□□□□ -0.01
HLA-DMBP28068 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-DMBP28068 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-DMBP28068 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC14.97□□□□□ -0.01
HLA-DMBP28068 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-DMBP28068 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-DMBP28068 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-DMBP28068 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC14.97□□□□□ -0.01
HLA-DMBP28068 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC14.97□□□□□ -0.01
HLA-DMBP28068 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC14.97□□□□□ -0.01
HLA-DMBP28068 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC14.97□□□□□ -0.01
HLA-DMBP28068 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-DMBP28068 AC093787.1-201ENST00000450396 207 ntBASIC14.97□□□□□ -0.01
HLA-DMBP28068 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-DMBP28068 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC14.97□□□□□ -0.01
HLA-DMBP28068 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC14.97□□□□□ -0.01
HLA-DMBP28068 AC008694.1-202ENST00000636953 945 ntBASIC14.97□□□□□ -0.01
HLA-DMBP28068 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms