Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
XRCC1P18887 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
XRCC1P18887 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
XRCC1P18887 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.65■□□□□ 0.74
XRCC1P18887 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
XRCC1P18887 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
XRCC1P18887 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
XRCC1P18887 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
XRCC1P18887 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
XRCC1P18887 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
XRCC1P18887 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
XRCC1P18887 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
XRCC1P18887 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
XRCC1P18887 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC19.64■□□□□ 0.73
XRCC1P18887 POM121L13P-201ENST00000422362 380 ntBASIC19.64■□□□□ 0.73
XRCC1P18887 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC19.64■□□□□ 0.73
XRCC1P18887 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC19.64■□□□□ 0.73
XRCC1P18887 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
XRCC1P18887 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC19.64■□□□□ 0.73
XRCC1P18887 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
XRCC1P18887 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.64■□□□□ 0.73
XRCC1P18887 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
XRCC1P18887 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
XRCC1P18887 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
XRCC1P18887 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.64■□□□□ 0.73
XRCC1P18887 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
XRCC1P18887 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.64■□□□□ 0.73
XRCC1P18887 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
XRCC1P18887 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
XRCC1P18887 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
XRCC1P18887 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
XRCC1P18887 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
XRCC1P18887 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
XRCC1P18887 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
XRCC1P18887 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
XRCC1P18887 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
XRCC1P18887 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
XRCC1P18887 BX323043.1-201ENST00000641006 1765 ntBASIC19.63■□□□□ 0.73
XRCC1P18887 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
XRCC1P18887 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
XRCC1P18887 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC19.63■□□□□ 0.73
XRCC1P18887 AC098590.1-201ENST00000468126 897 ntBASIC19.63■□□□□ 0.73
XRCC1P18887 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC19.63■□□□□ 0.73
XRCC1P18887 KLF2-202ENST00000592003 564 ntTSL 3 BASIC19.63■□□□□ 0.73
XRCC1P18887 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC19.63■□□□□ 0.73
XRCC1P18887 AC120498.8-201ENST00000614275 531 ntBASIC19.63■□□□□ 0.73
XRCC1P18887 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
XRCC1P18887 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
XRCC1P18887 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
XRCC1P18887 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
XRCC1P18887 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
XRCC1P18887 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.62■□□□□ 0.73
XRCC1P18887 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
XRCC1P18887 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
XRCC1P18887 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
XRCC1P18887 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.62■□□□□ 0.73
XRCC1P18887 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
XRCC1P18887 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
XRCC1P18887 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
XRCC1P18887 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
XRCC1P18887 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
XRCC1P18887 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
XRCC1P18887 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
XRCC1P18887 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.62■□□□□ 0.73
XRCC1P18887 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.62■□□□□ 0.73
XRCC1P18887 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
XRCC1P18887 GCSHP5-201ENST00000443090 522 ntBASIC19.62■□□□□ 0.73
XRCC1P18887 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.62■□□□□ 0.73
XRCC1P18887 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
XRCC1P18887 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.62■□□□□ 0.73
XRCC1P18887 AC006557.6-201ENST00000623071 864 ntBASIC19.62■□□□□ 0.73
XRCC1P18887 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.62■□□□□ 0.73
XRCC1P18887 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
XRCC1P18887 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.62■□□□□ 0.73
XRCC1P18887 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
XRCC1P18887 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
XRCC1P18887 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.61■□□□□ 0.73
XRCC1P18887 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC19.61■□□□□ 0.73
XRCC1P18887 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
XRCC1P18887 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC19.61■□□□□ 0.73
XRCC1P18887 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.61■□□□□ 0.73
XRCC1P18887 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
XRCC1P18887 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
XRCC1P18887 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
XRCC1P18887 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC19.61■□□□□ 0.73
XRCC1P18887 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
XRCC1P18887 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
XRCC1P18887 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
XRCC1P18887 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
XRCC1P18887 AC142381.4-202ENST00000563973 229 ntBASIC19.61■□□□□ 0.73
XRCC1P18887 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC19.61■□□□□ 0.73
XRCC1P18887 AC066615.1-201ENST00000640911 628 ntBASIC19.61■□□□□ 0.73
XRCC1P18887 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
XRCC1P18887 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
XRCC1P18887 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
XRCC1P18887 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
XRCC1P18887 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
XRCC1P18887 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.61■□□□□ 0.73
XRCC1P18887 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.61■□□□□ 0.73
XRCC1P18887 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms