Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 ABR-217ENST00000572441 563 ntTSL 4 BASIC20.5■□□□□ 0.87
VCANP13611 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VCANP13611 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
VCANP13611 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
VCANP13611 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.5■□□□□ 0.87
VCANP13611 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC20.49■□□□□ 0.87
VCANP13611 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VCANP13611 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC20.49■□□□□ 0.87
VCANP13611 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC20.49■□□□□ 0.87
VCANP13611 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
VCANP13611 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VCANP13611 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
VCANP13611 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.49■□□□□ 0.87
VCANP13611 TSPY19P-201ENST00000418461 509 ntBASIC20.49■□□□□ 0.87
VCANP13611 BX842568.4-201ENST00000421222 227 ntBASIC20.49■□□□□ 0.87
VCANP13611 TSPY18P-201ENST00000441642 509 ntBASIC20.49■□□□□ 0.87
VCANP13611 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC20.49■□□□□ 0.87
VCANP13611 LY6E-213ENST00000522528 606 ntTSL 3 BASIC20.49■□□□□ 0.87
VCANP13611 ZNF444P1-201ENST00000559497 298 ntBASIC20.49■□□□□ 0.87
VCANP13611 AP000692.2-201ENST00000608391 879 ntBASIC20.49■□□□□ 0.87
VCANP13611 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
VCANP13611 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
VCANP13611 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VCANP13611 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VCANP13611 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC20.49■□□□□ 0.87
VCANP13611 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VCANP13611 VPS51-217ENST00000639871 243 ntTSL 5 BASIC20.49■□□□□ 0.87
VCANP13611 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VCANP13611 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.49■□□□□ 0.87
VCANP13611 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VCANP13611 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
VCANP13611 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.48■□□□□ 0.87
VCANP13611 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VCANP13611 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VCANP13611 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VCANP13611 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
VCANP13611 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
VCANP13611 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.48■□□□□ 0.87
VCANP13611 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VCANP13611 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VCANP13611 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
VCANP13611 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC20.48■□□□□ 0.87
VCANP13611 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VCANP13611 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VCANP13611 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
VCANP13611 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VCANP13611 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC20.48■□□□□ 0.87
VCANP13611 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
VCANP13611 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
VCANP13611 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.48■□□□□ 0.87
VCANP13611 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
VCANP13611 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VCANP13611 AC004980.1-204ENST00000429707 299 ntBASIC20.48■□□□□ 0.87
VCANP13611 CYGB-204ENST00000589342 815 ntTSL 3 BASIC20.48■□□□□ 0.87
VCANP13611 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC20.48■□□□□ 0.87
VCANP13611 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VCANP13611 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.47■□□□□ 0.87
VCANP13611 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC20.47■□□□□ 0.87
VCANP13611 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VCANP13611 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VCANP13611 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VCANP13611 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC20.47■□□□□ 0.87
VCANP13611 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.47■□□□□ 0.87
VCANP13611 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VCANP13611 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
VCANP13611 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VCANP13611 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VCANP13611 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
VCANP13611 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.47■□□□□ 0.87
VCANP13611 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.47■□□□□ 0.87
VCANP13611 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VCANP13611 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC20.47■□□□□ 0.87
VCANP13611 MIR3197-201ENST00000582241 73 ntBASIC20.47■□□□□ 0.87
VCANP13611 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VCANP13611 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.47■□□□□ 0.87
VCANP13611 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.46■□□□□ 0.87
VCANP13611 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VCANP13611 AL645929.1-201ENST00000420084 975 ntBASIC20.46■□□□□ 0.87
VCANP13611 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VCANP13611 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
VCANP13611 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
VCANP13611 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.46■□□□□ 0.87
VCANP13611 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VCANP13611 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
VCANP13611 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VCANP13611 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VCANP13611 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
VCANP13611 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VCANP13611 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC20.46■□□□□ 0.87
VCANP13611 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
VCANP13611 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VCANP13611 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VCANP13611 GGCT-205ENST00000409436 954 ntTSL 3 BASIC20.46■□□□□ 0.87
VCANP13611 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC20.46■□□□□ 0.87
VCANP13611 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC20.46■□□□□ 0.87
VCANP13611 FGF14-AS2-201ENST00000606448 1074 ntBASIC20.46■□□□□ 0.87
VCANP13611 RCC2P6-201ENST00000526625 1557 ntBASIC20.46■□□□□ 0.87
VCANP13611 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
VCANP13611 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
VCANP13611 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms