Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
HMGB1P09429 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
HMGB1P09429 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
HMGB1P09429 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC23.28■■□□□ 1.32
HMGB1P09429 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
HMGB1P09429 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC23.28■■□□□ 1.32
HMGB1P09429 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
HMGB1P09429 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
HMGB1P09429 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
HMGB1P09429 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC23.28■■□□□ 1.32
HMGB1P09429 SOX15-203ENST00000570788 1093 ntBASIC23.28■■□□□ 1.32
HMGB1P09429 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
HMGB1P09429 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC23.28■■□□□ 1.32
HMGB1P09429 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
HMGB1P09429 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
HMGB1P09429 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
HMGB1P09429 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC23.28■■□□□ 1.32
HMGB1P09429 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC23.28■■□□□ 1.32
HMGB1P09429 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
HMGB1P09429 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC23.28■■□□□ 1.32
HMGB1P09429 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
HMGB1P09429 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
HMGB1P09429 AC124283.5-201ENST00000624661 1809 ntBASIC23.27■■□□□ 1.32
HMGB1P09429 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
HMGB1P09429 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC23.27■■□□□ 1.32
HMGB1P09429 AC008687.6-201ENST00000596318 630 ntBASIC23.27■■□□□ 1.32
HMGB1P09429 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC23.27■■□□□ 1.32
HMGB1P09429 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
HMGB1P09429 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
HMGB1P09429 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
HMGB1P09429 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC23.27■■□□□ 1.32
HMGB1P09429 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC23.27■■□□□ 1.32
HMGB1P09429 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.31
HMGB1P09429 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
HMGB1P09429 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
HMGB1P09429 PWWP2AP1-201ENST00000429776 2273 ntBASIC23.26■■□□□ 1.31
HMGB1P09429 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
HMGB1P09429 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
HMGB1P09429 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
HMGB1P09429 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
HMGB1P09429 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC23.26■■□□□ 1.31
HMGB1P09429 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC23.26■■□□□ 1.31
HMGB1P09429 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
HMGB1P09429 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
HMGB1P09429 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC23.26■■□□□ 1.31
HMGB1P09429 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
HMGB1P09429 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC23.26■■□□□ 1.31
HMGB1P09429 UNC93B4-201ENST00000505679 747 ntBASIC23.26■■□□□ 1.31
HMGB1P09429 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
HMGB1P09429 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
HMGB1P09429 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC23.26■■□□□ 1.31
HMGB1P09429 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC23.26■■□□□ 1.31
HMGB1P09429 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
HMGB1P09429 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC23.25■■□□□ 1.31
HMGB1P09429 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
HMGB1P09429 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
HMGB1P09429 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
HMGB1P09429 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC23.25■■□□□ 1.31
HMGB1P09429 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
HMGB1P09429 KLF13-207ENST00000560473 489 ntTSL 3 BASIC23.25■■□□□ 1.31
HMGB1P09429 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC23.25■■□□□ 1.31
HMGB1P09429 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC23.25■■□□□ 1.31
HMGB1P09429 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC23.25■■□□□ 1.31
HMGB1P09429 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
HMGB1P09429 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
HMGB1P09429 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
HMGB1P09429 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
HMGB1P09429 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
HMGB1P09429 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
HMGB1P09429 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
HMGB1P09429 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
HMGB1P09429 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC23.24■■□□□ 1.31
HMGB1P09429 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC23.24■■□□□ 1.31
HMGB1P09429 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
HMGB1P09429 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC23.24■■□□□ 1.31
HMGB1P09429 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
HMGB1P09429 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC23.24■■□□□ 1.31
HMGB1P09429 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
HMGB1P09429 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
HMGB1P09429 APTR-205ENST00000447009 902 ntTSL 2 BASIC23.24■■□□□ 1.31
HMGB1P09429 UNC93B5-201ENST00000530315 699 ntBASIC23.24■■□□□ 1.31
HMGB1P09429 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC23.24■■□□□ 1.31
HMGB1P09429 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC23.24■■□□□ 1.31
HMGB1P09429 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC23.24■■□□□ 1.31
HMGB1P09429 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
HMGB1P09429 AL121829.2-201ENST00000620908 328 ntBASIC23.24■■□□□ 1.31
HMGB1P09429 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
HMGB1P09429 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
HMGB1P09429 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC23.24■■□□□ 1.31
HMGB1P09429 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
HMGB1P09429 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
HMGB1P09429 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
HMGB1P09429 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC23.23■■□□□ 1.31
HMGB1P09429 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
HMGB1P09429 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC23.23■■□□□ 1.31
HMGB1P09429 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC23.23■■□□□ 1.31
HMGB1P09429 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
HMGB1P09429 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
HMGB1P09429 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC23.23■■□□□ 1.31
HMGB1P09429 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC23.23■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms