Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC19.3■□□□□ 0.68
SDC3O75056 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC19.3■□□□□ 0.68
SDC3O75056 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.3■□□□□ 0.68
SDC3O75056 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SDC3O75056 TFP1-202ENST00000475455 1573 ntBASIC19.3■□□□□ 0.68
SDC3O75056 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.3■□□□□ 0.68
SDC3O75056 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SDC3O75056 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.3■□□□□ 0.68
SDC3O75056 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.29■□□□□ 0.68
SDC3O75056 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
SDC3O75056 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC19.29■□□□□ 0.68
SDC3O75056 KRT18P22-201ENST00000402024 1347 ntBASIC19.29■□□□□ 0.68
SDC3O75056 SMG8-203ENST00000578922 2178 ntBASIC19.29■□□□□ 0.68
SDC3O75056 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.29■□□□□ 0.68
SDC3O75056 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SDC3O75056 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SDC3O75056 AL137013.1-201ENST00000432946 1228 ntBASIC19.29■□□□□ 0.68
SDC3O75056 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC19.29■□□□□ 0.68
SDC3O75056 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC19.29■□□□□ 0.68
SDC3O75056 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SDC3O75056 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.29■□□□□ 0.68
SDC3O75056 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC19.29■□□□□ 0.68
SDC3O75056 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SDC3O75056 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.29■□□□□ 0.68
SDC3O75056 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SDC3O75056 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
SDC3O75056 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SDC3O75056 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SDC3O75056 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SDC3O75056 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SDC3O75056 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SDC3O75056 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
SDC3O75056 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
SDC3O75056 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
SDC3O75056 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC19.28■□□□□ 0.68
SDC3O75056 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SDC3O75056 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SDC3O75056 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SDC3O75056 TERF1P1-201ENST00000311003 1181 ntBASIC19.28■□□□□ 0.68
SDC3O75056 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SDC3O75056 CRAT-202ENST00000393384 973 ntTSL 2 BASIC19.28■□□□□ 0.68
SDC3O75056 MESTP1-201ENST00000404287 994 ntBASIC19.28■□□□□ 0.68
SDC3O75056 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SDC3O75056 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC19.28■□□□□ 0.68
SDC3O75056 YBX1P10-201ENST00000444752 975 ntBASIC19.28■□□□□ 0.68
SDC3O75056 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.28■□□□□ 0.68
SDC3O75056 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SDC3O75056 NT5C-211ENST00000582170 653 ntTSL 3 BASIC19.28■□□□□ 0.68
SDC3O75056 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC19.28■□□□□ 0.68
SDC3O75056 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.28■□□□□ 0.68
SDC3O75056 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.28■□□□□ 0.68
SDC3O75056 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.28■□□□□ 0.68
SDC3O75056 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
SDC3O75056 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SDC3O75056 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SDC3O75056 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.28■□□□□ 0.68
SDC3O75056 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.28■□□□□ 0.68
SDC3O75056 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SDC3O75056 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
SDC3O75056 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SDC3O75056 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SDC3O75056 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SDC3O75056 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.27■□□□□ 0.68
SDC3O75056 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
SDC3O75056 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SDC3O75056 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SDC3O75056 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SDC3O75056 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SDC3O75056 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC19.27■□□□□ 0.68
SDC3O75056 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC19.27■□□□□ 0.68
SDC3O75056 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC19.27■□□□□ 0.68
SDC3O75056 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.27■□□□□ 0.68
SDC3O75056 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SDC3O75056 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC19.27■□□□□ 0.68
SDC3O75056 CBFB-203ENST00000561924 584 ntTSL 5 BASIC19.27■□□□□ 0.68
SDC3O75056 AL445675.2-201ENST00000620291 557 ntBASIC19.27■□□□□ 0.68
SDC3O75056 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SDC3O75056 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.27■□□□□ 0.68
SDC3O75056 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.27■□□□□ 0.68
SDC3O75056 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.27■□□□□ 0.68
SDC3O75056 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
SDC3O75056 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SDC3O75056 FSCN1P1-201ENST00000568912 1481 ntBASIC19.27■□□□□ 0.67
SDC3O75056 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SDC3O75056 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SDC3O75056 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.27■□□□□ 0.67
SDC3O75056 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
SDC3O75056 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SDC3O75056 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SDC3O75056 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC19.26■□□□□ 0.67
SDC3O75056 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.26■□□□□ 0.67
SDC3O75056 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
SDC3O75056 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.26■□□□□ 0.67
SDC3O75056 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
SDC3O75056 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SDC3O75056 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SDC3O75056 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SDC3O75056 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SDC3O75056 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC19.26■□□□□ 0.67
SDC3O75056 TUBB8P6-201ENST00000436895 1288 ntBASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms