Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 DSCAM-203ENST00000617870 6176 ntTSL 5 BASIC7.47□□□□□ -1.21
COL18A1P39060 LYRM4-201ENST00000330636 7312 ntAPPRIS P3 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL18A1P39060 POC1B-AS1-201ENST00000605233 8041 ntTSL 2 BASIC7.47□□□□□ -1.21
COL18A1P39060 AP001043.1-202ENST00000380931 5027 ntTSL 2 BASIC7.47□□□□□ -1.21
COL18A1P39060 RYBP-201ENST00000477973 7215 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL18A1P39060 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL18A1P39060 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC7.47□□□□□ -1.21
COL18A1P39060 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC7.47□□□□□ -1.21
COL18A1P39060 U3.36-201ENST00000408418 213 ntBASIC7.47□□□□□ -1.21
COL18A1P39060 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC7.47□□□□□ -1.21
COL18A1P39060 AC007161.1-204ENST00000423039 460 ntBASIC7.47□□□□□ -1.21
COL18A1P39060 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC7.47□□□□□ -1.21
COL18A1P39060 PA2G4P6-201ENST00000438325 1197 ntBASIC7.47□□□□□ -1.21
COL18A1P39060 BMPR1APS2-201ENST00000527904 1012 ntBASIC7.47□□□□□ -1.21
COL18A1P39060 CYP4F35P-202ENST00000636121 390 ntBASIC7.47□□□□□ -1.21
COL18A1P39060 KCNMA1-273ENST00000639913 12071 ntAPPRIS ALT2 TSL 5 BASIC7.47□□□□□ -1.21
COL18A1P39060 CCDC93-201ENST00000319432 6896 ntAPPRIS ALT1 TSL 5 BASIC7.47□□□□□ -1.21
COL18A1P39060 CCDC93-202ENST00000376300 6899 ntAPPRIS P2 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL18A1P39060 MEGF10-203ENST00000503335 7571 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL18A1P39060 PPFIA2-220ENST00000550584 5405 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
COL18A1P39060 EPN1-202ENST00000270460 16219 ntAPPRIS P1 TSL 2 BASIC7.47□□□□□ -1.21
COL18A1P39060 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC7.47□□□□□ -1.21
COL18A1P39060 FARP1-219ENST00000596580 13532 ntTSL 5 BASIC7.47□□□□□ -1.21
COL18A1P39060 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL18A1P39060 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL18A1P39060 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC7.47□□□□□ -1.21
COL18A1P39060 CTNND1-222ENST00000529919 4780 ntTSL 5 BASIC7.46□□□□□ -1.21
COL18A1P39060 CAND1-208ENST00000545606 11251 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
COL18A1P39060 NCBP3-201ENST00000389005 12770 ntAPPRIS P1 TSL 5 BASIC7.46□□□□□ -1.21
COL18A1P39060 CSDE1-218ENST00000610726 4312 ntTSL 5 BASIC7.46□□□□□ -1.21
COL18A1P39060 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC7.46□□□□□ -1.21
COL18A1P39060 PGR-202ENST00000325455 13748 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
COL18A1P39060 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC7.46□□□□□ -1.21
COL18A1P39060 EIF4EBP2P1-201ENST00000450009 343 ntBASIC7.46□□□□□ -1.21
COL18A1P39060 AL645937.3-201ENST00000453647 936 ntBASIC7.46□□□□□ -1.21
COL18A1P39060 RN7SL51P-201ENST00000468230 285 ntBASIC7.46□□□□□ -1.21
COL18A1P39060 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC7.46□□□□□ -1.21
COL18A1P39060 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC7.46□□□□□ -1.21
COL18A1P39060 RNU6ATAC24P-201ENST00000516811 135 ntBASIC7.46□□□□□ -1.21
COL18A1P39060 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC7.46□□□□□ -1.21
COL18A1P39060 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC7.46□□□□□ -1.21
COL18A1P39060 AC127381.1-201ENST00000555979 939 ntBASIC7.46□□□□□ -1.21
COL18A1P39060 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC7.46□□□□□ -1.21
COL18A1P39060 SAMMSON-209ENST00000641222 1100 ntBASIC7.46□□□□□ -1.21
COL18A1P39060 MYPN-201ENST00000354393 4596 ntTSL 1 (best) BASIC7.46□□□□□ -1.21
COL18A1P39060 FBXW7-203ENST00000296555 3572 ntTSL 1 (best) BASIC7.46□□□□□ -1.21
COL18A1P39060 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC7.46□□□□□ -1.21
COL18A1P39060 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC7.46□□□□□ -1.22
COL18A1P39060 DOCK8-205ENST00000453981 7237 ntTSL 5 BASIC7.46□□□□□ -1.22
COL18A1P39060 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
COL18A1P39060 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC7.46□□□□□ -1.22
COL18A1P39060 TRIM2-201ENST00000338700 6735 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
COL18A1P39060 RN7SKP103-201ENST00000363848 320 ntBASIC7.46□□□□□ -1.22
COL18A1P39060 RBMY2QP-201ENST00000429799 1147 ntBASIC7.46□□□□□ -1.22
COL18A1P39060 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC7.46□□□□□ -1.22
COL18A1P39060 RNU1-88P-201ENST00000459274 128 ntBASIC7.46□□□□□ -1.22
COL18A1P39060 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC7.46□□□□□ -1.22
COL18A1P39060 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC7.46□□□□□ -1.22
COL18A1P39060 AC067852.5-201ENST00000589299 310 ntBASIC7.46□□□□□ -1.22
COL18A1P39060 IGLCOR22-2-201ENST00000605398 313 ntBASIC7.46□□□□□ -1.22
COL18A1P39060 MIR6820-201ENST00000611508 62 ntBASIC7.46□□□□□ -1.22
COL18A1P39060 L3MBTL3-201ENST00000361794 4217 ntAPPRIS P4 TSL 5 BASIC7.45□□□□□ -1.22
COL18A1P39060 EPHA1-AS1-202ENST00000429289 5018 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
COL18A1P39060 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC7.45□□□□□ -1.22
COL18A1P39060 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
COL18A1P39060 AC092724.1-201ENST00000624623 3397 ntBASIC7.45□□□□□ -1.22
COL18A1P39060 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC7.45□□□□□ -1.22
COL18A1P39060 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL18A1P39060 AC114876.1-201ENST00000490962 1366 ntBASIC7.45□□□□□ -1.22
COL18A1P39060 EPS8-213ENST00000543612 2965 ntAPPRIS P1 TSL 2 BASIC7.45□□□□□ -1.22
COL18A1P39060 KLHL3-209ENST00000508657 6981 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
COL18A1P39060 LRRC28-201ENST00000301981 5971 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL18A1P39060 TRAPPC2-203ENST00000380579 2776 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL18A1P39060 ST6GAL1-211ENST00000448044 4302 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL18A1P39060 ATF7-202ENST00000456903 5218 ntAPPRIS P2 TSL 5 BASIC7.45□□□□□ -1.22
COL18A1P39060 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL18A1P39060 CCDC73-203ENST00000531481 4381 ntAPPRIS ALT2 TSL 2 BASIC7.45□□□□□ -1.22
COL18A1P39060 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC7.45□□□□□ -1.22
COL18A1P39060 MTHFD2P5-201ENST00000320415 844 ntBASIC7.45□□□□□ -1.22
COL18A1P39060 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
COL18A1P39060 OR4K12P-201ENST00000406538 961 ntBASIC7.45□□□□□ -1.22
COL18A1P39060 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC7.45□□□□□ -1.22
COL18A1P39060 DNAJB5P1-201ENST00000454004 806 ntBASIC7.45□□□□□ -1.22
COL18A1P39060 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC7.45□□□□□ -1.22
COL18A1P39060 AL031651.1-201ENST00000615357 1438 ntBASIC7.45□□□□□ -1.22
COL18A1P39060 AC091953.3-201ENST00000623220 236 ntBASIC7.45□□□□□ -1.22
COL18A1P39060 GUCY1A2-203ENST00000526355 16205 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL18A1P39060 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC7.45□□□□□ -1.22
COL18A1P39060 OR1M1-202ENST00000641627 2535 ntAPPRIS P1 BASIC7.45□□□□□ -1.22
COL18A1P39060 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC7.45□□□□□ -1.22
COL18A1P39060 AHI1-204ENST00000367800 5921 ntAPPRIS P2 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL18A1P39060 GOLGB1-201ENST00000340645 11187 ntAPPRIS P3 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL18A1P39060 OR2T33-202ENST00000641220 4118 ntAPPRIS P1 BASIC7.44□□□□□ -1.22
COL18A1P39060 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL18A1P39060 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL18A1P39060 KCNA2-214ENST00000640774 6673 ntTSL 5 BASIC7.44□□□□□ -1.22
COL18A1P39060 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL18A1P39060 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC7.44□□□□□ -1.22
COL18A1P39060 RNA5SP87-201ENST00000384155 118 ntBASIC7.44□□□□□ -1.22
COL18A1P39060 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms