Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC6.96□□□□□ -1.3
SCN4AP35499 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC6.96□□□□□ -1.3
SCN4AP35499 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC6.96□□□□□ -1.3
SCN4AP35499 OR4A42P-201ENST00000531397 938 ntBASIC6.96□□□□□ -1.3
SCN4AP35499 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC6.96□□□□□ -1.3
SCN4AP35499 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC6.96□□□□□ -1.3
SCN4AP35499 MIR4330-201ENST00000579077 105 ntBASIC6.96□□□□□ -1.3
SCN4AP35499 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC6.96□□□□□ -1.3
SCN4AP35499 OR7A11P-201ENST00000597719 953 ntBASIC6.96□□□□□ -1.3
SCN4AP35499 PACRG-210ENST00000611387 279 ntTSL 5 BASIC6.96□□□□□ -1.3
SCN4AP35499 AC009163.6-201ENST00000612367 342 ntBASIC6.96□□□□□ -1.3
SCN4AP35499 AC091953.3-201ENST00000623220 236 ntBASIC6.96□□□□□ -1.3
SCN4AP35499 AP002799.1-201ENST00000623552 423 ntBASIC6.96□□□□□ -1.3
SCN4AP35499 LINC01587-204ENST00000623565 873 ntTSL 2 BASIC6.96□□□□□ -1.3
SCN4AP35499 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC6.96□□□□□ -1.3
SCN4AP35499 AC003992.1-201ENST00000635364 557 ntBASIC6.96□□□□□ -1.3
SCN4AP35499 KDM5A-201ENST00000399788 10763 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
SCN4AP35499 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
SCN4AP35499 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
SCN4AP35499 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
SCN4AP35499 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC6.96□□□□□ -1.3
SCN4AP35499 ZNF24-204ENST00000589881 7419 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
SCN4AP35499 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
SCN4AP35499 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC6.96□□□□□ -1.3
SCN4AP35499 KCNMA1-266ENST00000639601 11920 ntAPPRIS ALT2 TSL 5 BASIC6.96□□□□□ -1.3
SCN4AP35499 CDY5P-201ENST00000411487 1580 ntBASIC6.96□□□□□ -1.3
SCN4AP35499 CDY9P-201ENST00000451397 1580 ntBASIC6.96□□□□□ -1.3
SCN4AP35499 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC6.96□□□□□ -1.3
SCN4AP35499 CTNND1-207ENST00000426142 5800 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
SCN4AP35499 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
SCN4AP35499 AC127070.3-201ENST00000503695 3263 ntBASIC6.95□□□□□ -1.3
SCN4AP35499 PPP1R12B-216ENST00000608999 15248 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
SCN4AP35499 HMCN2-206ENST00000624552 15610 ntAPPRIS P1 TSL 5 BASIC6.95□□□□□ -1.3
SCN4AP35499 AC008957.3-201ENST00000624112 2242 ntBASIC6.95□□□□□ -1.3
SCN4AP35499 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
SCN4AP35499 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
SCN4AP35499 BORCS7-ASMT-201ENST00000299353 2670 ntAPPRIS P1 TSL 5 BASIC6.95□□□□□ -1.3
SCN4AP35499 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
SCN4AP35499 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
SCN4AP35499 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
SCN4AP35499 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
SCN4AP35499 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC6.95□□□□□ -1.3
SCN4AP35499 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC6.95□□□□□ -1.3
SCN4AP35499 AC090142.2-201ENST00000483263 416 ntBASIC6.95□□□□□ -1.3
SCN4AP35499 EIF1P7-201ENST00000487533 337 ntBASIC6.95□□□□□ -1.3
SCN4AP35499 AC007686.1-201ENST00000488511 463 ntBASIC6.95□□□□□ -1.3
SCN4AP35499 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC6.95□□□□□ -1.3
SCN4AP35499 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC6.95□□□□□ -1.3
SCN4AP35499 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC6.95□□□□□ -1.3
SCN4AP35499 AC126177.5-201ENST00000549599 178 ntBASIC6.95□□□□□ -1.3
SCN4AP35499 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC6.95□□□□□ -1.3
SCN4AP35499 MIR4480-201ENST00000582492 71 ntBASIC6.95□□□□□ -1.3
SCN4AP35499 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC6.95□□□□□ -1.3
SCN4AP35499 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC6.95□□□□□ -1.3
SCN4AP35499 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
SCN4AP35499 SAMMSON-209ENST00000641222 1100 ntBASIC6.95□□□□□ -1.3
SCN4AP35499 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
SCN4AP35499 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC6.95□□□□□ -1.3
SCN4AP35499 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC6.95□□□□□ -1.3
SCN4AP35499 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
SCN4AP35499 CLCN3-209ENST00000513761 6692 ntAPPRIS ALT1 TSL 1 (best) BASIC6.95□□□□□ -1.3
SCN4AP35499 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC6.95□□□□□ -1.3
SCN4AP35499 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC6.95□□□□□ -1.3
SCN4AP35499 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
SCN4AP35499 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC6.95□□□□□ -1.3
SCN4AP35499 CIITA-201ENST00000324288 11952 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
SCN4AP35499 SYTL5-201ENST00000297875 4722 ntTSL 5 BASIC6.95□□□□□ -1.3
SCN4AP35499 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC6.95□□□□□ -1.3
SCN4AP35499 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
SCN4AP35499 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC6.95□□□□□ -1.3
SCN4AP35499 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC6.95□□□□□ -1.3
SCN4AP35499 MAP4K4-201ENST00000302217 6624 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
SCN4AP35499 RN7SKP28-201ENST00000364770 305 ntBASIC6.94□□□□□ -1.3
SCN4AP35499 RNA5SP211-201ENST00000365516 117 ntBASIC6.94□□□□□ -1.3
SCN4AP35499 MRRF-207ENST00000373729 870 ntTSL 3 BASIC6.94□□□□□ -1.3
SCN4AP35499 RNU1-77P-201ENST00000390868 162 ntBASIC6.94□□□□□ -1.3
SCN4AP35499 AC019205.1-201ENST00000421830 730 ntBASIC6.94□□□□□ -1.3
SCN4AP35499 PA2G4P6-201ENST00000438325 1197 ntBASIC6.94□□□□□ -1.3
SCN4AP35499 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC6.94□□□□□ -1.3
SCN4AP35499 AL035090.1-201ENST00000454835 332 ntBASIC6.94□□□□□ -1.3
SCN4AP35499 AC103563.5-201ENST00000455643 364 ntBASIC6.94□□□□□ -1.3
SCN4AP35499 AL021368.3-201ENST00000607119 578 ntBASIC6.94□□□□□ -1.3
SCN4AP35499 AC012254.5-201ENST00000623573 478 ntBASIC6.94□□□□□ -1.3
SCN4AP35499 CASC22-202ENST00000628396 802 ntTSL 5 BASIC6.94□□□□□ -1.3
SCN4AP35499 ACO1-201ENST00000309951 7466 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
SCN4AP35499 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC6.94□□□□□ -1.3
SCN4AP35499 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC6.94□□□□□ -1.3
SCN4AP35499 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC6.94□□□□□ -1.3
SCN4AP35499 AC131971.1-201ENST00000332881 1482 ntBASIC6.94□□□□□ -1.3
SCN4AP35499 EEF1A1P24-201ENST00000451469 1378 ntBASIC6.94□□□□□ -1.3
SCN4AP35499 AC091390.1-201ENST00000433904 331 ntBASIC6.94□□□□□ -1.3
SCN4AP35499 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC6.94□□□□□ -1.3
SCN4AP35499 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC6.94□□□□□ -1.3
SCN4AP35499 CT45A11P-201ENST00000448043 1134 ntBASIC6.94□□□□□ -1.3
SCN4AP35499 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC6.94□□□□□ -1.3
SCN4AP35499 AC027667.1-201ENST00000545814 304 ntBASIC6.94□□□□□ -1.3
SCN4AP35499 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC6.94□□□□□ -1.3
SCN4AP35499 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC6.94□□□□□ -1.3
SCN4AP35499 MIR378J-201ENST00000611988 109 ntBASIC6.94□□□□□ -1.3
SCN4AP35499 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC6.94□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms