Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SCGB2A2-201ENST00000227918 505 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL8A1P27658 IMMT-201ENST00000254636 2613 ntTSL 5 BASIC6.97□□□□□ -1.29
COL8A1P27658 AC103591.2-201ENST00000265259 766 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 SIMC1-201ENST00000332772 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL8A1P27658 DEFB105A-201ENST00000334773 330 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL8A1P27658 Y_RNA.67-201ENST00000362870 100 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 RN7SKP50-201ENST00000364694 315 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL8A1P27658 PYHIN1-202ENST00000368138 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL8A1P27658 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC6.97□□□□□ -1.29
COL8A1P27658 MIR621-201ENST00000384919 96 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 KCNAB1-202ENST00000389634 1119 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL8A1P27658 OR7E101P-201ENST00000400428 513 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 DNAJC19P6-201ENST00000401853 280 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC6.97□□□□□ -1.29
COL8A1P27658 RNU6-248P-201ENST00000410720 107 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 HMGN1P34-201ENST00000413023 290 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 SYNE1-211ENST00000413186 4860 ntTSL 5 BASIC6.97□□□□□ -1.29
COL8A1P27658 AL160290.1-201ENST00000415509 416 ntTSL 3 BASIC6.97□□□□□ -1.29
COL8A1P27658 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC6.97□□□□□ -1.29
COL8A1P27658 IGLV3-4-201ENST00000432300 244 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL8A1P27658 MTAPP2-201ENST00000437063 832 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC6.97□□□□□ -1.29
COL8A1P27658 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC6.97□□□□□ -1.29
COL8A1P27658 AC231532.1-201ENST00000438584 312 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 AC243962.1-201ENST00000441512 579 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC6.97□□□□□ -1.29
COL8A1P27658 AL627224.1-201ENST00000448334 444 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC6.97□□□□□ -1.29
COL8A1P27658 AC079776.3-201ENST00000450665 370 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC6.97□□□□□ -1.29
COL8A1P27658 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL8A1P27658 RN7SL335P-201ENST00000482790 304 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 AF213884.1-201ENST00000488102 463 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 RPL15P21-201ENST00000495592 567 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 SMR3B-202ENST00000504825 489 ntAPPRIS P1 TSL 3 BASIC6.97□□□□□ -1.29
COL8A1P27658 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC6.97□□□□□ -1.29
COL8A1P27658 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL8A1P27658 AL158068.2-201ENST00000510632 563 ntTSL 4 BASIC6.97□□□□□ -1.29
COL8A1P27658 AC008581.1-201ENST00000512650 385 ntTSL 3 BASIC6.97□□□□□ -1.29
COL8A1P27658 snoZ278.1-201ENST00000517059 112 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC6.97□□□□□ -1.29
COL8A1P27658 OR4C1P-201ENST00000530880 937 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 PDCL3P1-201ENST00000534575 734 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL8A1P27658 AL591767.2-201ENST00000554984 173 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 DRAIC-206ENST00000559029 309 ntTSL 3 BASIC6.97□□□□□ -1.29
COL8A1P27658 C16orf62-224ENST00000567245 573 ntTSL 5 BASIC6.97□□□□□ -1.29
COL8A1P27658 MIR3912-201ENST00000577566 105 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 AC022916.3-201ENST00000592961 742 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 RPARP-AS1-204ENST00000594818 445 ntTSL 3 BASIC6.97□□□□□ -1.29
COL8A1P27658 OR7A8P-201ENST00000595427 913 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 AC006262.2-201ENST00000599127 612 ntTSL 3 BASIC6.97□□□□□ -1.29
COL8A1P27658 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC6.97□□□□□ -1.29
COL8A1P27658 AL139286.1-201ENST00000604465 483 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 AL136295.6-201ENST00000610486 658 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 AC244153.1-204ENST00000615582 401 ntTSL 2 BASIC6.97□□□□□ -1.29
COL8A1P27658 AC015908.5-201ENST00000623289 343 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 AP003400.3-201ENST00000624904 346 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 AL138924.1-201ENST00000629067 415 ntTSL 3 BASIC6.97□□□□□ -1.29
COL8A1P27658 AC091046.3-201ENST00000631455 1574 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 RASSF3-206ENST00000637125 1060 ntAPPRIS P1 TSL 5 BASIC6.97□□□□□ -1.29
COL8A1P27658 SEC23IP-201ENST00000369075 7168 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL8A1P27658 OSBPL6-202ENST00000315022 2999 ntTSL 2 BASIC6.97□□□□□ -1.29
COL8A1P27658 FAM13A-201ENST00000264344 5858 ntAPPRIS P2 TSL 5 BASIC6.97□□□□□ -1.29
COL8A1P27658 DNAI1-201ENST00000242317 2504 ntAPPRIS P3 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL8A1P27658 CD36-209ENST00000435819 2365 ntAPPRIS P1 TSL 2 BASIC6.97□□□□□ -1.29
COL8A1P27658 CDY1B-202ENST00000382407 2227 ntAPPRIS P1 BASIC6.97□□□□□ -1.29
COL8A1P27658 LINC01182-202ENST00000510907 2228 ntTSL 2 BASIC6.97□□□□□ -1.29
COL8A1P27658 ARF4-209ENST00000496292 1467 ntTSL 5 BASIC6.97□□□□□ -1.29
COL8A1P27658 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL8A1P27658 NLRP3-206ENST00000391828 3853 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL8A1P27658 LRRC37A17P-201ENST00000570311 4693 ntBASIC6.97□□□□□ -1.29
COL8A1P27658 MAGOHB-201ENST00000320756 2623 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL8A1P27658 FAM217B-201ENST00000358293 5152 ntAPPRIS P2 TSL 2 BASIC6.97□□□□□ -1.29
COL8A1P27658 TMPRSS4-219ENST00000616579 3417 ntAPPRIS ALT2 TSL 5 BASIC6.97□□□□□ -1.29
COL8A1P27658 AC112719.2-201ENST00000501239 1685 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
COL8A1P27658 FAM47C-201ENST00000358047 3270 ntAPPRIS P1 BASIC6.96□□□□□ -1.29
COL8A1P27658 CTAGE9-201ENST00000314099 2334 ntAPPRIS P1 BASIC6.96□□□□□ -1.29
COL8A1P27658 NCOA4-201ENST00000578454 2307 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
COL8A1P27658 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
COL8A1P27658 INPP4B-212ENST00000507861 1506 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
COL8A1P27658 C2orf42-205ENST00000420306 2193 ntAPPRIS P1 TSL 2 BASIC6.96□□□□□ -1.29
COL8A1P27658 ARHGEF3-214ENST00000497267 2197 ntTSL 2 BASIC6.96□□□□□ -1.29
COL8A1P27658 HHLA2-201ENST00000357759 2666 ntAPPRIS P3 TSL 1 (best) BASIC6.96□□□□□ -1.29
COL8A1P27658 NLRP9P1-201ENST00000540920 2655 ntBASIC6.96□□□□□ -1.29
COL8A1P27658 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC6.96□□□□□ -1.29
COL8A1P27658 BDNF-204ENST00000395980 4030 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.29
COL8A1P27658 CTNNA2-218ENST00000541047 2870 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
COL8A1P27658 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC6.96□□□□□ -1.29
COL8A1P27658 PTGS2-201ENST00000367468 4514 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.29
COL8A1P27658 WDR11-AS1-203ENST00000598981 2242 ntTSL 5 BASIC6.96□□□□□ -1.29
COL8A1P27658 BBS12-201ENST00000314218 3244 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.29
COL8A1P27658 USP40-203ENST00000427112 3744 ntAPPRIS ALT2 TSL 1 (best) BASIC6.96□□□□□ -1.29
COL8A1P27658 UBE2V1-223ENST00000617119 2432 ntTSL 4 BASIC6.96□□□□□ -1.3
COL8A1P27658 DHRS9-201ENST00000357546 1917 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL8A1P27658 AC125232.1-201ENST00000452554 1408 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 SHC4-203ENST00000537958 1447 ntTSL 2 BASIC6.96□□□□□ -1.3
COL8A1P27658 LINC01695-203ENST00000453420 4486 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms