Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 MRRFP1-201ENST00000435941 1675 ntBASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 PRRC2C-201ENST00000338920 10355 ntAPPRIS P2 TSL 5 BASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 AC006213.6-201ENST00000623722 4179 ntBASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 MRM2-202ENST00000407040 582 ntTSL 3 BASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 EEF1B2P5-201ENST00000444820 548 ntBASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 AC021146.10-201ENST00000515628 706 ntBASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 MIR4301-201ENST00000577203 66 ntBASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 SETP3-201ENST00000581726 813 ntBASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 AC119403.2-201ENST00000590960 598 ntBASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 AC012557.1-201ENST00000607115 611 ntBASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 MLIP-206ENST00000502396 3102 ntAPPRIS ALT2 TSL 2 BASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 SLC14A1-201ENST00000321925 3971 ntAPPRIS P3 TSL 1 (best) BASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 SRRM1P3-201ENST00000426911 2678 ntBASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 AC007842.1-201ENST00000597336 2039 ntBASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 U8.4-201ENST00000363626 134 ntBASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 MIR223-201ENST00000385204 110 ntBASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 AL133173.1-201ENST00000423458 397 ntBASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 AL590762.4-201ENST00000425885 253 ntBASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 AC019185.1-201ENST00000442718 389 ntBASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 HIGD1AP14-201ENST00000507617 282 ntBASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 ZNF718-201ENST00000510175 3495 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 OR2T7-201ENST00000641057 3463 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 GPNMB-201ENST00000258733 2862 ntAPPRIS P3 TSL 1 (best) BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
CCDC88AQ3V6T2 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
CCDC88AQ3V6T2 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC7.21□□□□□ -1.25
CCDC88AQ3V6T2 AL139128.1-201ENST00000413921 941 ntBASIC7.21□□□□□ -1.25
CCDC88AQ3V6T2 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC7.21□□□□□ -1.25
CCDC88AQ3V6T2 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC7.21□□□□□ -1.25
CCDC88AQ3V6T2 RN7SL97P-201ENST00000486780 299 ntBASIC7.21□□□□□ -1.25
CCDC88AQ3V6T2 RN7SL808P-201ENST00000496066 299 ntBASIC7.21□□□□□ -1.25
CCDC88AQ3V6T2 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC7.21□□□□□ -1.25
CCDC88AQ3V6T2 AC023818.1-201ENST00000498379 384 ntBASIC7.21□□□□□ -1.25
CCDC88AQ3V6T2 LINC02218-201ENST00000503267 529 ntTSL 2 BASIC7.21□□□□□ -1.25
CCDC88AQ3V6T2 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC7.21□□□□□ -1.25
CCDC88AQ3V6T2 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC7.21□□□□□ -1.25
CCDC88AQ3V6T2 AC137695.1-201ENST00000604126 489 ntBASIC7.21□□□□□ -1.25
CCDC88AQ3V6T2 AC100827.5-201ENST00000615883 426 ntBASIC7.21□□□□□ -1.25
CCDC88AQ3V6T2 AP002505.2-201ENST00000623585 696 ntBASIC7.21□□□□□ -1.25
CCDC88AQ3V6T2 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC7.21□□□□□ -1.25
CCDC88AQ3V6T2 LINC01616-201ENST00000561816 2280 ntBASIC7.21□□□□□ -1.25
CCDC88AQ3V6T2 BZW1-203ENST00000409600 6875 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
CCDC88AQ3V6T2 MRE11P1-201ENST00000464884 2127 ntBASIC7.21□□□□□ -1.25
CCDC88AQ3V6T2 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.25
CCDC88AQ3V6T2 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC7.21□□□□□ -1.25
CCDC88AQ3V6T2 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.25
CCDC88AQ3V6T2 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC7.21□□□□□ -1.26
CCDC88AQ3V6T2 NUP93-202ENST00000542526 8257 ntTSL 2 BASIC7.21□□□□□ -1.26
CCDC88AQ3V6T2 AL109941.1-201ENST00000401925 229 ntBASIC7.21□□□□□ -1.26
CCDC88AQ3V6T2 AL133270.1-201ENST00000402635 279 ntBASIC7.21□□□□□ -1.26
CCDC88AQ3V6T2 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC7.21□□□□□ -1.26
CCDC88AQ3V6T2 AC015977.1-201ENST00000418887 292 ntBASIC7.21□□□□□ -1.26
CCDC88AQ3V6T2 AL445928.1-201ENST00000435545 222 ntBASIC7.21□□□□□ -1.26
CCDC88AQ3V6T2 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC7.21□□□□□ -1.26
CCDC88AQ3V6T2 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC7.21□□□□□ -1.26
CCDC88AQ3V6T2 AC079922.1-201ENST00000443291 359 ntBASIC7.21□□□□□ -1.26
CCDC88AQ3V6T2 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC7.21□□□□□ -1.26
CCDC88AQ3V6T2 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC7.21□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 124 ms