Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC087360.1-201ENST00000518788 616 ntBASIC6.23□□□□□ -1.41
COL4A4P53420 NRBF2P4-201ENST00000520874 850 ntBASIC6.23□□□□□ -1.41
COL4A4P53420 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
COL4A4P53420 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC6.23□□□□□ -1.41
COL4A4P53420 AC096996.1-201ENST00000563813 325 ntBASIC6.23□□□□□ -1.41
COL4A4P53420 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC6.23□□□□□ -1.41
COL4A4P53420 HCG18-243ENST00000602498 327 ntTSL 3 BASIC6.23□□□□□ -1.41
COL4A4P53420 AL049539.1-201ENST00000611964 459 ntBASIC6.23□□□□□ -1.41
COL4A4P53420 AP000550.3-201ENST00000637734 379 ntBASIC6.23□□□□□ -1.41
COL4A4P53420 CASC19-264ENST00000641912 1184 ntBASIC6.23□□□□□ -1.41
COL4A4P53420 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL4A4P53420 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC6.23□□□□□ -1.41
COL4A4P53420 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC6.23□□□□□ -1.41
COL4A4P53420 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL4A4P53420 AC007842.1-201ENST00000597336 2039 ntBASIC6.23□□□□□ -1.41
COL4A4P53420 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC6.23□□□□□ -1.41
COL4A4P53420 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL4A4P53420 MRE11P1-201ENST00000464884 2127 ntBASIC6.23□□□□□ -1.41
COL4A4P53420 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC6.23□□□□□ -1.41
COL4A4P53420 FBXW7-203ENST00000296555 3572 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL4A4P53420 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC6.23□□□□□ -1.41
COL4A4P53420 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC6.23□□□□□ -1.41
COL4A4P53420 GAN-202ENST00000568107 15244 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL4A4P53420 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC6.23□□□□□ -1.41
COL4A4P53420 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC6.23□□□□□ -1.41
COL4A4P53420 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL4A4P53420 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
COL4A4P53420 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC6.23□□□□□ -1.41
COL4A4P53420 RN7SKP151-201ENST00000410230 316 ntBASIC6.23□□□□□ -1.41
COL4A4P53420 SOX9-AS1-202ENST00000414600 742 ntTSL 3 BASIC6.23□□□□□ -1.41
COL4A4P53420 CYCSP12-201ENST00000437729 300 ntBASIC6.23□□□□□ -1.41
COL4A4P53420 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC6.23□□□□□ -1.41
COL4A4P53420 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC6.23□□□□□ -1.41
COL4A4P53420 OR7E116P-201ENST00000448529 957 ntBASIC6.23□□□□□ -1.41
COL4A4P53420 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC6.23□□□□□ -1.41
COL4A4P53420 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC6.23□□□□□ -1.41
COL4A4P53420 RPS17P15-201ENST00000475609 349 ntBASIC6.23□□□□□ -1.41
COL4A4P53420 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC6.23□□□□□ -1.41
COL4A4P53420 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC6.23□□□□□ -1.41
COL4A4P53420 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC6.23□□□□□ -1.41
COL4A4P53420 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC6.23□□□□□ -1.41
COL4A4P53420 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC6.23□□□□□ -1.41
COL4A4P53420 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC6.23□□□□□ -1.41
COL4A4P53420 FKBP1AP1-201ENST00000594588 318 ntBASIC6.23□□□□□ -1.41
COL4A4P53420 AC087783.2-201ENST00000605070 562 ntBASIC6.23□□□□□ -1.41
COL4A4P53420 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC6.23□□□□□ -1.41
COL4A4P53420 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC6.23□□□□□ -1.41
COL4A4P53420 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC6.23□□□□□ -1.41
COL4A4P53420 LRRC28-201ENST00000301981 5971 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL4A4P53420 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC6.22□□□□□ -1.41
COL4A4P53420 AC068733.2-201ENST00000605434 1418 ntBASIC6.22□□□□□ -1.41
COL4A4P53420 OXCT1-206ENST00000512084 1593 ntTSL 2 BASIC6.22□□□□□ -1.41
COL4A4P53420 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL4A4P53420 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC6.22□□□□□ -1.41
COL4A4P53420 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC6.22□□□□□ -1.41
COL4A4P53420 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL4A4P53420 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC6.22□□□□□ -1.41
COL4A4P53420 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL4A4P53420 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL4A4P53420 AL590004.4-201ENST00000566733 7060 ntBASIC6.22□□□□□ -1.41
COL4A4P53420 ZNF549-204ENST00000602149 5505 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
COL4A4P53420 SPOCK1-201ENST00000282223 4488 ntTSL 5 BASIC6.22□□□□□ -1.41
COL4A4P53420 GMDS-AS1-202ENST00000505870 8217 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
COL4A4P53420 NLRP13-202ENST00000588751 3533 ntAPPRIS ALT2 TSL 5 BASIC6.22□□□□□ -1.41
COL4A4P53420 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL4A4P53420 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC6.22□□□□□ -1.41
COL4A4P53420 AL109941.1-201ENST00000401925 229 ntBASIC6.22□□□□□ -1.41
COL4A4P53420 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC6.22□□□□□ -1.41
COL4A4P53420 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC6.22□□□□□ -1.41
COL4A4P53420 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC6.22□□□□□ -1.41
COL4A4P53420 RPL23AP27-201ENST00000415161 451 ntBASIC6.22□□□□□ -1.41
COL4A4P53420 AC099677.3-201ENST00000427081 395 ntBASIC6.22□□□□□ -1.41
COL4A4P53420 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC6.22□□□□□ -1.41
COL4A4P53420 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC6.22□□□□□ -1.41
COL4A4P53420 AL731534.1-201ENST00000434711 269 ntBASIC6.22□□□□□ -1.41
COL4A4P53420 AC015983.1-201ENST00000441577 373 ntBASIC6.22□□□□□ -1.41
COL4A4P53420 AC083795.1-201ENST00000491760 320 ntBASIC6.22□□□□□ -1.41
COL4A4P53420 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC6.22□□□□□ -1.41
COL4A4P53420 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC6.22□□□□□ -1.41
COL4A4P53420 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
COL4A4P53420 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC6.22□□□□□ -1.41
COL4A4P53420 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC6.22□□□□□ -1.41
COL4A4P53420 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC6.22□□□□□ -1.41
COL4A4P53420 AC126915.2-201ENST00000610957 190 ntBASIC6.22□□□□□ -1.41
COL4A4P53420 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC6.22□□□□□ -1.41
COL4A4P53420 ZMYND8-206ENST00000372023 5144 ntAPPRIS ALT2 TSL 5 BASIC6.22□□□□□ -1.41
COL4A4P53420 AC008124.1-201ENST00000609803 9730 ntBASIC6.22□□□□□ -1.41
COL4A4P53420 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC6.22□□□□□ -1.41
COL4A4P53420 ZNF101P1-201ENST00000435701 1720 ntBASIC6.22□□□□□ -1.41
COL4A4P53420 CAND1-208ENST00000545606 11251 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL4A4P53420 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
COL4A4P53420 MYLK4-201ENST00000274643 5806 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL4A4P53420 GRIN2A-202ENST00000396573 14450 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL4A4P53420 RBPJ-201ENST00000342295 5860 ntTSL 5 BASIC6.21□□□□□ -1.41
COL4A4P53420 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
COL4A4P53420 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC6.21□□□□□ -1.41
COL4A4P53420 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC6.21□□□□□ -1.41
COL4A4P53420 AC022819.1-201ENST00000563495 3910 ntBASIC6.21□□□□□ -1.41
COL4A4P53420 FBXO40-201ENST00000338040 5929 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
COL4A4P53420 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms