Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 RTTN-222ENST00000640769 8088 ntAPPRIS P1 TSL 2 BASIC7.03□□□□□ -1.28
BRCA1P38398 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
BRCA1P38398 DOCK2-211ENST00000520908 4654 ntTSL 2 BASIC7.03□□□□□ -1.28
BRCA1P38398 RNA5SP305-201ENST00000362665 119 ntBASIC7.02□□□□□ -1.28
BRCA1P38398 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.28
BRCA1P38398 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC7.02□□□□□ -1.28
BRCA1P38398 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC7.02□□□□□ -1.28
BRCA1P38398 AC023141.8-201ENST00000442554 208 ntBASIC7.02□□□□□ -1.28
BRCA1P38398 SNRPCP2-201ENST00000504370 475 ntBASIC7.02□□□□□ -1.28
BRCA1P38398 AC079075.1-201ENST00000559543 878 ntBASIC7.02□□□□□ -1.28
BRCA1P38398 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
BRCA1P38398 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC7.02□□□□□ -1.29
BRCA1P38398 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC7.02□□□□□ -1.29
BRCA1P38398 RBPJ-201ENST00000342295 5860 ntTSL 5 BASIC7.02□□□□□ -1.29
BRCA1P38398 AP005131.1-201ENST00000585366 4745 ntTSL 5 BASIC7.02□□□□□ -1.29
BRCA1P38398 BDNF-207ENST00000395986 3979 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
BRCA1P38398 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC7.02□□□□□ -1.29
BRCA1P38398 USP47-203ENST00000399455 7396 ntAPPRIS ALT2 TSL 5 BASIC7.02□□□□□ -1.29
BRCA1P38398 OR5T2-202ENST00000641661 2062 ntAPPRIS ALT2 BASIC7.02□□□□□ -1.29
BRCA1P38398 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
BRCA1P38398 KCNMA1-212ENST00000406533 5639 ntAPPRIS ALT2 TSL 5 BASIC7.02□□□□□ -1.29
BRCA1P38398 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
BRCA1P38398 NRCAM-204ENST00000379028 6685 ntAPPRIS ALT2 TSL 5 BASIC7.02□□□□□ -1.29
BRCA1P38398 IMMTP1-201ENST00000435590 2219 ntBASIC7.02□□□□□ -1.29
BRCA1P38398 ONECUT2-202ENST00000491143 16121 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
BRCA1P38398 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
BRCA1P38398 AL772161.1-201ENST00000439130 476 ntBASIC7.02□□□□□ -1.29
BRCA1P38398 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC7.02□□□□□ -1.29
BRCA1P38398 AC021678.3-201ENST00000517893 476 ntBASIC7.02□□□□□ -1.29
BRCA1P38398 AC011840.5-201ENST00000582125 771 ntBASIC7.02□□□□□ -1.29
BRCA1P38398 AC069307.1-201ENST00000602820 447 ntBASIC7.02□□□□□ -1.29
BRCA1P38398 AC024255.1-201ENST00000614376 102 ntBASIC7.02□□□□□ -1.29
BRCA1P38398 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC7.02□□□□□ -1.29
BRCA1P38398 CYP4F35P-202ENST00000636121 390 ntBASIC7.02□□□□□ -1.29
BRCA1P38398 SAMMSON-209ENST00000641222 1100 ntBASIC7.02□□□□□ -1.29
BRCA1P38398 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC7.02□□□□□ -1.29
BRCA1P38398 NCBP3-201ENST00000389005 12770 ntAPPRIS P1 TSL 5 BASIC7.02□□□□□ -1.29
BRCA1P38398 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC7.02□□□□□ -1.29
BRCA1P38398 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC7.02□□□□□ -1.29
BRCA1P38398 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC7.01□□□□□ -1.29
BRCA1P38398 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
BRCA1P38398 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC7.01□□□□□ -1.29
BRCA1P38398 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
BRCA1P38398 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC7.01□□□□□ -1.29
BRCA1P38398 RNA5SP319-201ENST00000362768 119 ntBASIC7.01□□□□□ -1.29
BRCA1P38398 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC7.01□□□□□ -1.29
BRCA1P38398 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC7.01□□□□□ -1.29
BRCA1P38398 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC7.01□□□□□ -1.29
BRCA1P38398 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC7.01□□□□□ -1.29
BRCA1P38398 RNU6ATAC24P-201ENST00000516811 135 ntBASIC7.01□□□□□ -1.29
BRCA1P38398 AC087360.1-201ENST00000518788 616 ntBASIC7.01□□□□□ -1.29
BRCA1P38398 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC7.01□□□□□ -1.29
BRCA1P38398 AC063949.1-201ENST00000552900 865 ntBASIC7.01□□□□□ -1.29
BRCA1P38398 AL445647.2-201ENST00000615170 130 ntBASIC7.01□□□□□ -1.29
BRCA1P38398 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC7.01□□□□□ -1.29
BRCA1P38398 TCF12-207ENST00000557843 4076 ntAPPRIS ALT1 TSL 1 (best) BASIC7.01□□□□□ -1.29
BRCA1P38398 PDE4DIP-246ENST00000618462 8150 ntAPPRIS ALT2 TSL 1 (best) BASIC7.01□□□□□ -1.29
BRCA1P38398 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC7.01□□□□□ -1.29
BRCA1P38398 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
BRCA1P38398 HELB-201ENST00000247815 12866 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
BRCA1P38398 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC7.01□□□□□ -1.29
BRCA1P38398 LINC01197-205ENST00000614853 1774 ntTSL 3 BASIC7□□□□□ -1.29
BRCA1P38398 PANDAR-201ENST00000629595 1506 ntBASIC7□□□□□ -1.29
BRCA1P38398 RNU4-4P-201ENST00000364588 130 ntBASIC7□□□□□ -1.29
BRCA1P38398 MRRF-207ENST00000373729 870 ntTSL 3 BASIC7□□□□□ -1.29
BRCA1P38398 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC7□□□□□ -1.29
BRCA1P38398 OR4A40P-201ENST00000533878 948 ntBASIC7□□□□□ -1.29
BRCA1P38398 AL512310.9-201ENST00000553311 948 ntBASIC7□□□□□ -1.29
BRCA1P38398 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC7□□□□□ -1.29
BRCA1P38398 AC090527.3-201ENST00000619041 548 ntBASIC7□□□□□ -1.29
BRCA1P38398 TEX41-254ENST00000626394 423 ntTSL 5 BASIC7□□□□□ -1.29
BRCA1P38398 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC7□□□□□ -1.29
BRCA1P38398 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC7□□□□□ -1.29
BRCA1P38398 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC7□□□□□ -1.29
BRCA1P38398 AL034549.2-201ENST00000618285 3373 ntBASIC7□□□□□ -1.29
BRCA1P38398 AL079307.1-201ENST00000553312 5982 ntTSL 1 (best) BASIC7□□□□□ -1.29
BRCA1P38398 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
BRCA1P38398 RASGEF1B-203ENST00000436139 6323 ntTSL 1 (best) BASIC7□□□□□ -1.29
BRCA1P38398 ZNF160-208ENST00000599056 4229 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
BRCA1P38398 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC7□□□□□ -1.29
BRCA1P38398 TBCK-201ENST00000273980 8101 ntAPPRIS P1 TSL 5 BASIC7□□□□□ -1.29
BRCA1P38398 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC7□□□□□ -1.29
BRCA1P38398 EFCAB6-203ENST00000396231 4424 ntAPPRIS ALT2 TSL 1 (best) BASIC7□□□□□ -1.29
BRCA1P38398 TMED8-201ENST00000216468 7784 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
BRCA1P38398 STXBP5-203ENST00000367480 3297 ntTSL 5 BASIC7□□□□□ -1.29
BRCA1P38398 KPNA1-201ENST00000344337 6830 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
BRCA1P38398 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC7□□□□□ -1.29
BRCA1P38398 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC7□□□□□ -1.29
BRCA1P38398 RMRPP5-201ENST00000411156 267 ntBASIC7□□□□□ -1.29
BRCA1P38398 AL133325.1-201ENST00000421090 382 ntBASIC7□□□□□ -1.29
BRCA1P38398 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC7□□□□□ -1.29
BRCA1P38398 AC090114.3-201ENST00000479267 829 ntBASIC7□□□□□ -1.29
BRCA1P38398 AC109462.1-201ENST00000491087 368 ntBASIC7□□□□□ -1.29
BRCA1P38398 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC7□□□□□ -1.29
BRCA1P38398 AC013701.1-201ENST00000522657 465 ntBASIC7□□□□□ -1.29
BRCA1P38398 PFDN1-207ENST00000524074 395 ntTSL 5 BASIC7□□□□□ -1.29
BRCA1P38398 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC7□□□□□ -1.29
BRCA1P38398 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC7□□□□□ -1.29
BRCA1P38398 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC7□□□□□ -1.29
BRCA1P38398 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC7□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms