Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
SMARCA1P28370 AC006511.3-201ENST00000624929 1783 ntBASIC7.12□□□□□ -1.27
SMARCA1P28370 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC7.12□□□□□ -1.27
SMARCA1P28370 AL513548.1-201ENST00000562904 1724 ntBASIC7.12□□□□□ -1.27
SMARCA1P28370 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
SMARCA1P28370 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
SMARCA1P28370 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC7.11□□□□□ -1.27
SMARCA1P28370 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
SMARCA1P28370 USP40-202ENST00000409945 1946 ntTSL 2 BASIC7.11□□□□□ -1.27
SMARCA1P28370 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
SMARCA1P28370 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
SMARCA1P28370 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC7.11□□□□□ -1.27
SMARCA1P28370 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
SMARCA1P28370 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC7.11□□□□□ -1.27
SMARCA1P28370 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
SMARCA1P28370 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC7.11□□□□□ -1.27
SMARCA1P28370 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
SMARCA1P28370 RNU6-386P-201ENST00000362650 107 ntBASIC7.11□□□□□ -1.27
SMARCA1P28370 SNORA51.9-201ENST00000384295 124 ntBASIC7.11□□□□□ -1.27
SMARCA1P28370 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
SMARCA1P28370 CXADRP1-201ENST00000398098 1095 ntBASIC7.11□□□□□ -1.27
SMARCA1P28370 NPM1P38-201ENST00000403835 865 ntBASIC7.11□□□□□ -1.27
SMARCA1P28370 MTND4LP17-201ENST00000414607 293 ntBASIC7.11□□□□□ -1.27
SMARCA1P28370 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC7.11□□□□□ -1.27
SMARCA1P28370 AL691517.1-201ENST00000440833 1235 ntBASIC7.11□□□□□ -1.27
SMARCA1P28370 AC079922.1-201ENST00000443291 359 ntBASIC7.11□□□□□ -1.27
SMARCA1P28370 AL512593.1-201ENST00000444758 779 ntBASIC7.11□□□□□ -1.27
SMARCA1P28370 GXYLT1P1-201ENST00000446657 490 ntBASIC7.11□□□□□ -1.27
SMARCA1P28370 RPL7L1P3-201ENST00000455249 689 ntBASIC7.11□□□□□ -1.27
SMARCA1P28370 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC7.11□□□□□ -1.27
SMARCA1P28370 RPL17P2-201ENST00000491913 451 ntBASIC7.11□□□□□ -1.27
SMARCA1P28370 RPL37P23-201ENST00000492641 294 ntBASIC7.11□□□□□ -1.27
SMARCA1P28370 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC7.11□□□□□ -1.27
SMARCA1P28370 RBBP4P1-201ENST00000502424 1276 ntBASIC7.11□□□□□ -1.27
SMARCA1P28370 LSM3P4-201ENST00000502948 309 ntBASIC7.11□□□□□ -1.27
SMARCA1P28370 AC011853.1-201ENST00000518911 454 ntBASIC7.11□□□□□ -1.27
SMARCA1P28370 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC7.11□□□□□ -1.27
SMARCA1P28370 KCTD9P6-201ENST00000522306 950 ntBASIC7.11□□□□□ -1.27
SMARCA1P28370 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC7.11□□□□□ -1.27
SMARCA1P28370 BMPR1APS2-201ENST00000527904 1012 ntBASIC7.11□□□□□ -1.27
SMARCA1P28370 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC7.11□□□□□ -1.27
SMARCA1P28370 AC092865.1-201ENST00000544395 1023 ntBASIC7.11□□□□□ -1.27
SMARCA1P28370 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC7.11□□□□□ -1.27
SMARCA1P28370 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC7.11□□□□□ -1.27
SMARCA1P28370 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC7.11□□□□□ -1.27
SMARCA1P28370 AC020916.2-201ENST00000591242 360 ntBASIC7.11□□□□□ -1.27
SMARCA1P28370 AC068768.2-201ENST00000602352 343 ntBASIC7.11□□□□□ -1.27
SMARCA1P28370 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC7.11□□□□□ -1.27
SMARCA1P28370 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC7.11□□□□□ -1.27
SMARCA1P28370 AC092266.1-201ENST00000610958 165 ntBASIC7.11□□□□□ -1.27
SMARCA1P28370 CXADRP3-202ENST00000617265 1100 ntBASIC7.11□□□□□ -1.27
SMARCA1P28370 AL512652.1-201ENST00000619006 500 ntBASIC7.11□□□□□ -1.27
SMARCA1P28370 AC073592.6-201ENST00000624271 415 ntBASIC7.11□□□□□ -1.27
SMARCA1P28370 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC7.11□□□□□ -1.27
SMARCA1P28370 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC7.11□□□□□ -1.27
SMARCA1P28370 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC7.11□□□□□ -1.27
SMARCA1P28370 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
SMARCA1P28370 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
SMARCA1P28370 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
SMARCA1P28370 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC7.11□□□□□ -1.27
SMARCA1P28370 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC7.11□□□□□ -1.27
SMARCA1P28370 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC7.11□□□□□ -1.27
SMARCA1P28370 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
SMARCA1P28370 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
SMARCA1P28370 SHQ1P1-201ENST00000437111 1544 ntBASIC7.11□□□□□ -1.27
SMARCA1P28370 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC7.11□□□□□ -1.27
SMARCA1P28370 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
SMARCA1P28370 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC7.1□□□□□ -1.27
SMARCA1P28370 RBMY1HP-201ENST00000382759 1389 ntBASIC7.1□□□□□ -1.27
SMARCA1P28370 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
SMARCA1P28370 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC7.1□□□□□ -1.27
SMARCA1P28370 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC7.1□□□□□ -1.27
SMARCA1P28370 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
SMARCA1P28370 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC7.1□□□□□ -1.27
SMARCA1P28370 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC7.1□□□□□ -1.27
SMARCA1P28370 CRP-204ENST00000368112 787 ntTSL 2 BASIC7.1□□□□□ -1.27
SMARCA1P28370 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC7.1□□□□□ -1.27
SMARCA1P28370 MIR7-1-201ENST00000384871 110 ntBASIC7.1□□□□□ -1.27
SMARCA1P28370 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
SMARCA1P28370 VN1R12P-201ENST00000403778 876 ntBASIC7.1□□□□□ -1.27
SMARCA1P28370 AL139039.2-201ENST00000407436 479 ntBASIC7.1□□□□□ -1.27
SMARCA1P28370 UBE2V1P15-201ENST00000407776 448 ntBASIC7.1□□□□□ -1.27
SMARCA1P28370 SNORA11.5-201ENST00000408163 128 ntBASIC7.1□□□□□ -1.27
SMARCA1P28370 RN7SKP151-201ENST00000410230 316 ntBASIC7.1□□□□□ -1.27
SMARCA1P28370 RNU4-64P-201ENST00000410795 131 ntBASIC7.1□□□□□ -1.27
SMARCA1P28370 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC7.1□□□□□ -1.27
SMARCA1P28370 AC116036.1-201ENST00000412199 367 ntBASIC7.1□□□□□ -1.27
SMARCA1P28370 AC245096.1-201ENST00000413104 546 ntBASIC7.1□□□□□ -1.27
SMARCA1P28370 GAS5-202ENST00000414075 413 ntTSL 2 BASIC7.1□□□□□ -1.27
SMARCA1P28370 RPS15AP30-201ENST00000420976 390 ntBASIC7.1□□□□□ -1.27
SMARCA1P28370 AC023141.3-201ENST00000436698 278 ntBASIC7.1□□□□□ -1.27
SMARCA1P28370 RPL6P30-201ENST00000443382 862 ntBASIC7.1□□□□□ -1.27
SMARCA1P28370 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC7.1□□□□□ -1.27
SMARCA1P28370 HGF-207ENST00000453018 721 ntTSL 3 BASIC7.1□□□□□ -1.27
SMARCA1P28370 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC7.1□□□□□ -1.27
SMARCA1P28370 Z83838.1-202ENST00000456225 839 ntBASIC7.1□□□□□ -1.27
SMARCA1P28370 AC073594.1-201ENST00000462065 364 ntBASIC7.1□□□□□ -1.27
SMARCA1P28370 AC092905.1-201ENST00000467527 949 ntBASIC7.1□□□□□ -1.27
SMARCA1P28370 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC7.1□□□□□ -1.27
SMARCA1P28370 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC7.1□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms