Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC6.49□□□□□ -1.37
DKK3Q9UBP4 AC022206.1-201ENST00000495947 347 ntBASIC6.49□□□□□ -1.37
DKK3Q9UBP4 RNA5SP418-201ENST00000515951 117 ntBASIC6.49□□□□□ -1.37
DKK3Q9UBP4 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC6.49□□□□□ -1.37
DKK3Q9UBP4 AC104997.1-201ENST00000519761 717 ntBASIC6.49□□□□□ -1.37
DKK3Q9UBP4 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC6.49□□□□□ -1.37
DKK3Q9UBP4 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC6.49□□□□□ -1.37
DKK3Q9UBP4 AL161757.4-202ENST00000557467 737 ntTSL 3 BASIC6.49□□□□□ -1.37
DKK3Q9UBP4 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC6.49□□□□□ -1.37
DKK3Q9UBP4 AL589863.1-201ENST00000595383 631 ntBASIC6.49□□□□□ -1.37
DKK3Q9UBP4 OR7A11P-201ENST00000597719 953 ntBASIC6.49□□□□□ -1.37
DKK3Q9UBP4 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC6.49□□□□□ -1.37
DKK3Q9UBP4 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC6.49□□□□□ -1.37
DKK3Q9UBP4 AL671309.1-201ENST00000603750 544 ntBASIC6.49□□□□□ -1.37
DKK3Q9UBP4 AC097504.2-201ENST00000608088 454 ntBASIC6.49□□□□□ -1.37
DKK3Q9UBP4 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC6.49□□□□□ -1.37
DKK3Q9UBP4 AC090912.3-201ENST00000609775 533 ntBASIC6.49□□□□□ -1.37
DKK3Q9UBP4 AC063944.3-201ENST00000609969 533 ntBASIC6.49□□□□□ -1.37
DKK3Q9UBP4 uc_338.29-201ENST00000615099 168 ntBASIC6.49□□□□□ -1.37
DKK3Q9UBP4 AL591926.1-201ENST00000620542 217 ntBASIC6.49□□□□□ -1.37
DKK3Q9UBP4 AC006453.5-201ENST00000636451 619 ntBASIC6.49□□□□□ -1.37
DKK3Q9UBP4 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC6.49□□□□□ -1.37
DKK3Q9UBP4 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
DKK3Q9UBP4 SAGE3P-201ENST00000619800 1635 ntBASIC6.49□□□□□ -1.37
DKK3Q9UBP4 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC6.49□□□□□ -1.37
DKK3Q9UBP4 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
DKK3Q9UBP4 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
DKK3Q9UBP4 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC6.49□□□□□ -1.37
DKK3Q9UBP4 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
DKK3Q9UBP4 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC6.49□□□□□ -1.37
DKK3Q9UBP4 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 AC022034.1-201ENST00000512867 2156 ntBASIC6.48□□□□□ -1.37
DKK3Q9UBP4 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 MSL3P1-202ENST00000440028 1468 ntBASIC6.48□□□□□ -1.37
DKK3Q9UBP4 AC015689.2-201ENST00000528172 1738 ntBASIC6.48□□□□□ -1.37
DKK3Q9UBP4 ZNF449-201ENST00000339249 3773 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 RNA5SP350-201ENST00000363298 111 ntBASIC6.48□□□□□ -1.37
DKK3Q9UBP4 SNORD35A-201ENST00000363389 86 ntBASIC6.48□□□□□ -1.37
DKK3Q9UBP4 RNU6-670P-201ENST00000364312 104 ntBASIC6.48□□□□□ -1.37
DKK3Q9UBP4 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 AL050335.1-201ENST00000396909 869 ntBASIC6.48□□□□□ -1.37
DKK3Q9UBP4 RN7SKP281-201ENST00000410472 352 ntBASIC6.48□□□□□ -1.37
DKK3Q9UBP4 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 AC099782.1-201ENST00000425889 474 ntBASIC6.48□□□□□ -1.37
DKK3Q9UBP4 AL022319.1-201ENST00000458183 1167 ntBASIC6.48□□□□□ -1.37
DKK3Q9UBP4 EIF2S2P4-201ENST00000461070 984 ntBASIC6.48□□□□□ -1.37
DKK3Q9UBP4 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 H3F3AP5-201ENST00000475267 429 ntBASIC6.48□□□□□ -1.37
DKK3Q9UBP4 AC022415.1-202ENST00000486612 523 ntBASIC6.48□□□□□ -1.37
DKK3Q9UBP4 AC106822.1-201ENST00000502647 526 ntBASIC6.48□□□□□ -1.37
DKK3Q9UBP4 ATG10-AS1-201ENST00000504846 648 ntBASIC6.48□□□□□ -1.37
DKK3Q9UBP4 AC091965.3-201ENST00000506236 208 ntBASIC6.48□□□□□ -1.37
DKK3Q9UBP4 AC027338.1-201ENST00000514840 825 ntBASIC6.48□□□□□ -1.37
DKK3Q9UBP4 ODF1-202ENST00000518835 368 ntTSL 3 BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 AC130364.2-201ENST00000528639 604 ntBASIC6.48□□□□□ -1.37
DKK3Q9UBP4 CD69-203ENST00000536709 1020 ntTSL 2 BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 OLR1-210ENST00000544577 924 ntTSL 5 BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 AC011270.1-201ENST00000558606 583 ntBASIC6.48□□□□□ -1.37
DKK3Q9UBP4 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 AC004908.3-201ENST00000610248 625 ntBASIC6.48□□□□□ -1.37
DKK3Q9UBP4 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 AC048344.4-201ENST00000619744 527 ntBASIC6.48□□□□□ -1.37
DKK3Q9UBP4 MIR6811-201ENST00000620409 58 ntBASIC6.48□□□□□ -1.37
DKK3Q9UBP4 AC008993.2-201ENST00000631744 806 ntBASIC6.48□□□□□ -1.37
DKK3Q9UBP4 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 AC005332.9-201ENST00000620266 2921 ntBASIC6.48□□□□□ -1.37
DKK3Q9UBP4 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
DKK3Q9UBP4 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
DKK3Q9UBP4 AC116158.1-201ENST00000560231 2129 ntBASIC6.47□□□□□ -1.37
DKK3Q9UBP4 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
DKK3Q9UBP4 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC6.47□□□□□ -1.37
DKK3Q9UBP4 AL359694.2-201ENST00000567753 1615 ntBASIC6.47□□□□□ -1.37
DKK3Q9UBP4 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC6.47□□□□□ -1.37
DKK3Q9UBP4 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC6.47□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms