Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 BPIFC-204ENST00000534972 1809 ntTSL 5 BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 NEK5-201ENST00000355568 2918 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 HABP2-201ENST00000351270 3009 ntAPPRIS P3 TSL 1 (best) BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AC012321.1-201ENST00000561622 1588 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 ZNF849P-201ENST00000594711 1566 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AC008957.3-201ENST00000624112 2242 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 CLNK-204ENST00000515667 4180 ntAPPRIS ALT2 TSL 3 BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 C5orf24-201ENST00000338051 4270 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AC127070.3-201ENST00000503695 3263 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 BCL2L14-203ENST00000308721 1897 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 LINC01087-201ENST00000431979 3516 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 KLHL5-204ENST00000504108 2690 ntTSL 2 BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 REG1CP-201ENST00000377435 1705 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 MAPK10-383ENST00000642032 3390 ntBASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 DMD-202ENST00000343523 5623 ntTSL 5 BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 MGST2-201ENST00000265498 801 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 MLXIP-203ENST00000377037 805 ntTSL 5 BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 MIR513B-201ENST00000385136 84 ntBASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 AL353651.1-201ENST00000415629 355 ntTSL 5 BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 AC000089.1-201ENST00000424559 801 ntBASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 E2F6P1-201ENST00000428850 745 ntBASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 FGF13-AS1-201ENST00000438238 849 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 PA2G4P6-201ENST00000438325 1197 ntBASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 HMGB1P5-202ENST00000451497 985 ntBASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 NAP1L1P3-201ENST00000462291 880 ntBASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 RN7SL216P-201ENST00000471607 298 ntBASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 AC087672.1-201ENST00000479876 766 ntBASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 OR11I1P-201ENST00000486033 954 ntBASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 AC021146.11-201ENST00000503319 491 ntBASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 AC025459.1-201ENST00000504072 156 ntBASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 AC139491.5-201ENST00000510029 920 ntTSL 5 BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 UGT2A3P7-201ENST00000510485 734 ntBASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 AC093878.1-201ENST00000515630 432 ntBASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 IGKV2D-38-201ENST00000518423 240 ntBASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 AC022915.3-201ENST00000518620 594 ntTSL 4 BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 CCL2-202ENST00000580907 736 ntTSL 2 BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 AL161457.2-206ENST00000592778 802 ntTSL 5 BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 IGKV2OR2-7D-201ENST00000603664 304 ntBASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 IGKV2OR2-7-201ENST00000604652 304 ntBASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 U6.48-201ENST00000618523 106 ntBASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 AC091304.6-201ENST00000619761 202 ntBASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 AC034229.6-201ENST00000623704 224 ntBASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 AC005858.3-201ENST00000624756 589 ntBASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 NXF4-202ENST00000416098 1465 ntBASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 FCGR1B-210ENST00000623603 1581 ntAPPRIS P2 TSL 1 (best) BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 DEUP1-209ENST00000531792 1656 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 KCNIP4-201ENST00000359001 2168 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 CA10-204ENST00000570565 2276 ntTSL 5 BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 ACKR2-201ENST00000422265 2956 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 RIPOR2-207ENST00000540914 3614 ntTSL 2 BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 KLHL5-201ENST00000261425 3425 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 ACPP-201ENST00000336375 3125 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC6.76□□□□□ -1.33
TRIM39Q9HCM9 C2CD5-212ENST00000542676 3438 ntTSL 2 BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 TBX15-201ENST00000207157 3492 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 ANTXR2-204ENST00000404191 1469 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 AC007255.1-201ENST00000450540 1376 ntTSL 3 BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 CCDC150P1-201ENST00000537123 2215 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 TRIM55-203ENST00000350034 1177 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 RNU4-68P-201ENST00000364314 141 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 RN7SKP118-201ENST00000364331 330 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 RN7SKP191-201ENST00000364713 306 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 AC233289.1-201ENST00000403700 508 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 MTND4P3-201ENST00000417829 541 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 HMGB1P49-201ENST00000418882 569 ntBASIC6.75□□□□□ -1.33
TRIM39Q9HCM9 RPA2P2-201ENST00000419698 796 ntBASIC6.75□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms