Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 GSTO2-202ENST00000369707 6423 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 COL4A6-203ENST00000394872 6750 ntTSL 5 BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 PHACTR1-201ENST00000332995 5332 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 AC100871.1-201ENST00000507871 1456 ntBASIC5.57□□□□□ -1.52
VPS13AQ96RL7 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 KIAA1958-201ENST00000337530 11775 ntAPPRIS P2 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 DTHD1-201ENST00000357504 3203 ntTSL 2 BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 LAMB4-202ENST00000388781 5858 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 AC015983.1-201ENST00000441577 373 ntBASIC5.57□□□□□ -1.52
VPS13AQ96RL7 AC073264.2-201ENST00000448886 166 ntBASIC5.57□□□□□ -1.52
VPS13AQ96RL7 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 AC095057.1-201ENST00000507583 168 ntBASIC5.57□□□□□ -1.52
VPS13AQ96RL7 MAL2-208ENST00000523307 556 ntTSL 4 BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 AC134349.2-201ENST00000535136 910 ntBASIC5.57□□□□□ -1.52
VPS13AQ96RL7 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 NR5A2-206ENST00000544748 4775 ntAPPRIS ALT1 TSL 2 BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 CSDE1-218ENST00000610726 4312 ntTSL 5 BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 AC006213.6-201ENST00000623722 4179 ntBASIC5.57□□□□□ -1.52
VPS13AQ96RL7 DIDO1-206ENST00000395340 7551 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 SNHG14-208ENST00000453082 6087 ntTSL 5 BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 ZNF521-214ENST00000584787 4327 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 RNU6ATAC21P-201ENST00000408656 126 ntBASIC5.57□□□□□ -1.52
VPS13AQ96RL7 AL357752.1-201ENST00000412817 349 ntBASIC5.57□□□□□ -1.52
VPS13AQ96RL7 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 RN7SL51P-201ENST00000468230 285 ntBASIC5.57□□□□□ -1.52
VPS13AQ96RL7 AP002981.1-201ENST00000517692 975 ntBASIC5.57□□□□□ -1.52
VPS13AQ96RL7 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 ARPP21-203ENST00000396482 2416 ntTSL 2 BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 ZNF175-201ENST00000262259 6535 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 TNC-202ENST00000350763 7641 ntAPPRIS P2 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 MFSD8-239ENST00000641590 2479 ntBASIC5.57□□□□□ -1.52
VPS13AQ96RL7 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 NFX1-203ENST00000379540 4604 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 GAPDHP42-201ENST00000406848 981 ntBASIC5.57□□□□□ -1.52
VPS13AQ96RL7 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 RMRPP5-201ENST00000411156 267 ntBASIC5.57□□□□□ -1.52
VPS13AQ96RL7 AC068138.1-201ENST00000412635 217 ntBASIC5.57□□□□□ -1.52
VPS13AQ96RL7 AC019205.1-201ENST00000421830 730 ntBASIC5.57□□□□□ -1.52
VPS13AQ96RL7 OR2AM1P-201ENST00000422137 422 ntBASIC5.57□□□□□ -1.52
VPS13AQ96RL7 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 AC008033.2-201ENST00000542626 177 ntBASIC5.57□□□□□ -1.52
VPS13AQ96RL7 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 MYOM1-201ENST00000261606 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 NT5DC1-201ENST00000319550 6923 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS13AQ96RL7 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC5.56□□□□□ -1.52
VPS13AQ96RL7 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.56□□□□□ -1.52
VPS13AQ96RL7 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
VPS13AQ96RL7 SGMS2-202ENST00000394684 6149 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
VPS13AQ96RL7 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
VPS13AQ96RL7 RNA5SP91-201ENST00000390902 119 ntBASIC5.56□□□□□ -1.52
VPS13AQ96RL7 AL049693.1-201ENST00000402760 611 ntBASIC5.56□□□□□ -1.52
VPS13AQ96RL7 MGAT2P2-201ENST00000427194 797 ntBASIC5.56□□□□□ -1.52
VPS13AQ96RL7 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC5.56□□□□□ -1.52
VPS13AQ96RL7 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC5.56□□□□□ -1.52
VPS13AQ96RL7 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC5.56□□□□□ -1.52
VPS13AQ96RL7 MIR3160-1-201ENST00000577972 85 ntBASIC5.56□□□□□ -1.52
VPS13AQ96RL7 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC5.56□□□□□ -1.52
VPS13AQ96RL7 TRIM59-208ENST00000543469 4615 ntTSL 5 BASIC5.56□□□□□ -1.52
VPS13AQ96RL7 TTLL4-201ENST00000258398 4730 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
VPS13AQ96RL7 LRRC2-202ENST00000395905 5100 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
VPS13AQ96RL7 SENP8-201ENST00000340912 4281 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
VPS13AQ96RL7 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC5.56□□□□□ -1.52
VPS13AQ96RL7 TIAL1-203ENST00000369093 5072 ntTSL 2 BASIC5.56□□□□□ -1.52
VPS13AQ96RL7 OR55B1P-203ENST00000641518 2602 ntBASIC5.56□□□□□ -1.52
VPS13AQ96RL7 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC5.56□□□□□ -1.52
VPS13AQ96RL7 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
VPS13AQ96RL7 HIVEP2-203ENST00000367604 10032 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
VPS13AQ96RL7 LCT-201ENST00000264162 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
VPS13AQ96RL7 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
VPS13AQ96RL7 NPM1P40-201ENST00000412758 733 ntBASIC5.56□□□□□ -1.52
VPS13AQ96RL7 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.56□□□□□ -1.52
VPS13AQ96RL7 AC126615.2-201ENST00000553003 515 ntBASIC5.56□□□□□ -1.52
VPS13AQ96RL7 AC018558.5-201ENST00000565840 952 ntBASIC5.56□□□□□ -1.52
VPS13AQ96RL7 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC5.56□□□□□ -1.52
VPS13AQ96RL7 MIR4277-201ENST00000578298 84 ntBASIC5.56□□□□□ -1.52
VPS13AQ96RL7 BEND2-202ENST00000380033 4611 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
VPS13AQ96RL7 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
VPS13AQ96RL7 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
VPS13AQ96RL7 AC026951.1-201ENST00000559530 2459 ntBASIC5.56□□□□□ -1.52
VPS13AQ96RL7 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 82.8 ms