Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 RN7SKP128-201ENST00000364270 303 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 RNA5SP131-201ENST00000365452 119 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC127526.2-201ENST00000426436 775 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AL157400.1-201ENST00000428166 368 ntTSL 5 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 DEFA9P-201ENST00000433042 285 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC005487.1-201ENST00000440208 665 ntTSL 5 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 LINC01013-203ENST00000443303 569 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 RPS23P6-201ENST00000466136 431 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 RN7SL643P-201ENST00000471845 291 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 SNORA43.3-201ENST00000517240 103 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AP006245.2-201ENST00000522004 300 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC112191.2-201ENST00000522428 333 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC079600.1-201ENST00000550326 297 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 FCF1-203ENST00000553615 954 ntTSL 3 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC016180.1-201ENST00000567945 403 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 ZNF322P1-201ENST00000568013 1209 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC092121.1-201ENST00000569452 202 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AL357153.4-201ENST00000620487 1016 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 CDY10P-201ENST00000452415 1567 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 COX6B1P3-201ENST00000312310 260 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 GAPDHP48-201ENST00000436626 961 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 H2AFZP6-201ENST00000444403 394 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 GEMIN2P1-201ENST00000454246 752 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC006530.1-201ENST00000555980 571 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 MIR3189-201ENST00000578735 73 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC007204.2-201ENST00000615022 616 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AL731566.2-201ENST00000618971 317 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 GGCX-201ENST00000233838 7569 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 SLC4A8-203ENST00000453097 11824 ntAPPRIS P3 TSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 CCAT2-201ENST00000630920 1752 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 PRLR-208ENST00000509140 1610 ntTSL 5 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 NR5A2-206ENST00000544748 4775 ntAPPRIS ALT1 TSL 2 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 LYSMD3-203ENST00000500869 3863 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AL450996.1-201ENST00000445574 1202 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC091685.2-201ENST00000454924 864 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 RANP1-206ENST00000455094 651 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 RN7SL269P-201ENST00000467795 305 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 RN7SL727P-201ENST00000482164 296 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 CASP5-209ENST00000531367 879 ntTSL 5 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 STARD6-202ENST00000577499 696 ntTSL 2 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 NEK2P4-201ENST00000425793 1329 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AL512310.3-201ENST00000547023 1335 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 GAPDHP75-201ENST00000433910 943 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC008953.1-201ENST00000497334 318 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 PGAM1P13-201ENST00000507497 754 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 CASC22-202ENST00000628396 802 ntTSL 5 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 CASC19-264ENST00000641912 1184 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 LINC01197-205ENST00000614853 1774 ntTSL 3 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 LIMD1-201ENST00000273317 11331 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms